PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G055000.1
Common NamePOPTR_0001s13970g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-YC
Protein Properties Length: 146aa    MW: 16162.4 Da    PI: 9.7122
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G055000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC48.12.5e-1510951397
               NF-YC 13 atdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97
                        +t   + e+P  rik+i+k d+d +++ a+a  l+s + elf+  l+ +s   a e+kr+ +k   i aav+r + + dfl+d  p
  Potri.001G055000.1 10 ETTTTRPEFPTGRIKRIMKLDKDTNKVNADALFLVSSSTELFLRFLAEKSAEVAIEKKRKIVKLDHIRAAVKRHHpTSDFLLDSLP 95
                        44455779****************************************************************976489*****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.53E-181095IPR009072Histone-fold
Gene3DG3DSA:1.10.20.103.5E-191181IPR009072Histone-fold
PfamPF008084.3E-191780IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MVESEENKTE TTTTRPEFPT GRIKRIMKLD KDTNKVNADA LFLVSSSTEL FLRFLAEKSA  60
EVAIEKKRKI VKLDHIRAAV KRHHPTSDFL LDSLPLPAQS SEKPASDNTS ARTVTDKPAP  120
AGTRRIDQFF AKAASEEVPV LINES*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G055000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002297836.21e-100nuclear transcription factor Y subunit C-5
TrEMBLB9GMJ46e-99B9GMJ4_POPTR; NF-YC family protein
STRINGPOPTR_0001s13970.11e-99(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111053139
Representative plantOGRP94721213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.15e-47nuclear factor Y, subunit C13