PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G053500.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 337aa    MW: 38285.9 Da    PI: 10.3307
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G053500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.42.6e-20257291135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++Cg+ kTp+WR gpdg+ktLCnaCG++y++ +l
  Potri.001G053500.1 257 CQHCGVEKTPQWRAGPDGPKTLCNACGVRYKSGRL 291
                         *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.9E-18251301IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.585251287IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.66E-15253314No hitNo description
Gene3DG3DSA:3.30.50.102.5E-15255289IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.58E-14256304No hitNo description
PfamPF003204.2E-18257291IPR000679Zinc finger, GATA-type
PROSITE patternPS003440257282IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MIKKCKKKKI NTHEKKVPSF PPIKKKKRKN PRVHREIILA KRNERLPLSP SKHQKSLSVE  60
NKPKTKSFLG FFFFFFEEME SLDTAACFMV DDLLDFCSDI GEEEDGEEHQ RNSKKSRRAL  120
PSLNPNALHP ASFNVLEHSL LPEFAEEELE WLSNKDAFPT VETCFGSLSG EPGSIPKHHS  180
PVSVLENSTT SSTSNSGNSS NSNIIMSYCR LRVPVKARSK RHHRHPREIQ EQECWWSQEN  240
FITRKPAVSV AKLGRKCQHC GVEKTPQWRA GPDGPKTLCN ACGVRYKSGR LVPEYRPANS  300
PTFSSKLHSN SHRKVVEMRR QKQMTGLLVA KPMDKG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1628KKKINTHEKKVPSFPPIKKKKRK
22328KKKKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.106560.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in roots. Also expressed in stems, flowers and leaves. {ECO:0000269|PubMed:12139008}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G053500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1494820.0AC149482.1 Populus trichocarpa clone Pop1-69G3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024445253.10.0GATA transcription factor 1
SwissprotQ8LAU93e-51GATA1_ARATH; GATA transcription factor 1
TrEMBLA0A2K2BSR50.0A0A2K2BSR5_POPTR; Uncharacterized protein
STRINGPOPTR_0001s14130.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85372941
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.12e-52GATA transcription factor 1