PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G047500.1 | ||||||||
Common Name | POPTR_0001s14780g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C2H2 | ||||||||
Protein Properties | Length: 287aa MW: 31703.3 Da PI: 8.4634 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.4 | 0.00023 | 112 | 134 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Potri.001G047500.1 112 FSCNYCQRKFYSSQALGGHQNAH 134 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.5E-6 | 108 | 139 | No hit | No description |
PROSITE profile | PS50157 | 11.427 | 112 | 139 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 114 | 134 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MEPPARSEAC LSETSSIISV SNAPLSLKPS VIMKSQKEVK QLEEDQEEEE EERHQQGVDT 60 NYGLVLDLSL SSKDSKQDSS KPQLNLIDSF DMDPSRKSLD TPQGNETEPR VFSCNYCQRK 120 FYSSQALGGH QNAHKRERTL SKRGQRISAA SFALLQPNYS HQNGYTSMAS LPLHGSFNRS 180 LGIQVHSMIH KPFSTSSSSS IYGQNGWSRK PIDQQPAIGR LASDKFQMAT SIKGSSSSNG 240 VARFESTRKF SPVSTEGIGG FWWDGGVNHL KTKQDDLQKL DLSLKL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G047500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002297800.2 | 0.0 | zinc finger protein 1 | ||||
TrEMBL | B9GMC4 | 0.0 | B9GMC4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s14780.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1439 | 31 | 72 | Representative plant | OGRP82 | 15 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10970.1 | 3e-42 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G047500.1 |
Entrez Gene | 7496052 |