PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G044500.1 | ||||||||
Common Name | POPTR_0001s03620g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | WRKY | ||||||||
Protein Properties | Length: 319aa MW: 35131.4 Da PI: 8.9609 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.6 | 1.4e-29 | 163 | 222 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv+rs +d++v++ tYegeHnh+ Potri.001G044500.1 163 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFApSCPVKKKVQRSIDDQSVLVATYEGEHNHP 222 58***************************99****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.2E-28 | 154 | 224 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 26.773 | 158 | 224 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.35E-25 | 160 | 224 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-33 | 163 | 223 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.0E-24 | 164 | 222 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0002237 | Biological Process | response to molecule of bacterial origin | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0050691 | Biological Process | regulation of defense response to virus by host | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MDNSSWVDTS LDLNINPLRV KSDAPVDAES FGVPRKMKPT FMFQTKPSAK EETGAIEEEL 60 NRVSEENRKL TEMLTVMCEN YNALRNQLMD CMCKNGEKEL HGPSKKRKSA SNNNNDNNIA 120 MNGNSESSST DEELSKKPRE EVIKAKTSRA YVKTEAGDKS LIVKDGYQWR KYGQKVTRDN 180 PSPRAYFKCS FAPSCPVKKK VQRSIDDQSV LVATYEGEHN HPHPSMEATS GSSHGLTLGS 240 VPCSASLASS GKTNITLDLT KSKSSNDAKS SKPKTDAPEV RQFLVEQMAS SLTKDPNFTA 300 ALAAAISGRM LQQNHTKW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-19 | 162 | 224 | 13 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00251 | DAP | Transfer from AT1G80840 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G044500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR025520 | 0.0 | KR025520.1 Populus trichocarpa WRKY40 transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006368511.1 | 0.0 | probable WRKY transcription factor 40 | ||||
Swissprot | Q9SAH7 | 1e-104 | WRK40_ARATH; Probable WRKY transcription factor 40 | ||||
TrEMBL | B9N9Y4 | 0.0 | B9N9Y4_POPTR; WRKY40 transcription factor | ||||
STRING | POPTR_0001s03620.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF973 | 34 | 115 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 1e-100 | WRKY DNA-binding protein 40 |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G044500.1 |
Entrez Gene | 18094260 |