PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G041500.1
Common NamePOPTR_0001s03300g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family AP2
Protein Properties Length: 342aa    MW: 39049 Da    PI: 6.7988
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G041500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.82.3e-124096155
                 AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                        s y+GV++++++gr++A+++d  s+n  ++k+ + g ++ +e Aa a++ a++k++g
  Potri.001G041500.1 40 SIYRGVTRHRWTGRYEAHLWDkNSWNEsQNKKGRQGAYDDEEAAAHAYDLAALKYWG 96
                        57*******************88889998888888********************98 PP
2AP250.84e-16139190155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Potri.001G041500.1 139 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 190
                         89****99**********99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.2E-84096IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-1540106IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-1241104IPR001471AP2/ERF domain
PROSITE profilePS5103218.82141104IPR001471AP2/ERF domain
SMARTSM003801.9E-1841110IPR001471AP2/ERF domain
PRINTSPR003674.6E-64253IPR001471AP2/ERF domain
PfamPF008477.2E-12139190IPR001471AP2/ERF domain
CDDcd000185.93E-23139200No hitNo description
SuperFamilySSF541711.18E-17139200IPR016177DNA-binding domain
PROSITE profilePS5103218.268140198IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-17140199IPR001471AP2/ERF domain
SMARTSM003801.3E-24140204IPR001471AP2/ERF domain
PRINTSPR003674.6E-6180200IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MGKTSKQSLK DTANTSTNPT NKVKRTRKTV PRDSPPQRSS IYRGVTRHRW TGRYEAHLWD  60
KNSWNESQNK KGRQGAYDDE EAAAHAYDLA ALKYWGQDTI LNFPWSTYKE ELKEMEGQSK  120
EEYIGSLRRK SSGFSRGVSK YRGVARHHHN GRWEARIGRV FGNKYLYLGT YATQEEAATA  180
YDMAAIEYRG INAVTNFDLS RYIKWLRPNN HNNVNNPQQN PNCDANPIQN LDQKIELDFM  240
PHQQSSNVNG TEELTDPARS DCPLTPLPPL TPPESDRDPP RRSFPDDIQT VFDCQDSSSY  300
TDDDDINIFG ELNPFASPIF HYELDGQEMV FGPNKSNILT T*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G041500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB7741611e-136AB774161.1 Ricinus communis RcWRI3 mRNA for AP2-type transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002297679.20.0AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-119AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A2K2BS440.0A0A2K2BS44_POPTR; Uncharacterized protein
STRINGPOPTR_0001s03300.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.14e-93ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]