PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G029800.9
Common NamePOPTR_0001s06700g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bZIP
Protein Properties Length: 466aa    MW: 51552.8 Da    PI: 6.1994
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G029800.9genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1301.1e-09179220445
                         XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                          k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Potri.001G029800.9 179 QKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 220
                         5888*************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.8E-9176239IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.415178222IPR004827Basic-leucine zipper domain
PfamPF001709.0E-7180220IPR004827Basic-leucine zipper domain
CDDcd147084.78E-22180232No hitNo description
SuperFamilySSF579597.5E-7180223No hitNo description
Gene3DG3DSA:1.20.5.1701.6E-7181224No hitNo description
PROSITE patternPS000360183198IPR004827Basic-leucine zipper domain
PfamPF141441.0E-32262337IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0009627Biological Processsystemic acquired resistance
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MPSFDPQLPI SNAICVEGST IHPHCATYFG VFLEDDAIDL SPGAVFNSAK ERTQAIPSDP  60
LTSGALDKKQ SSSVQVESQR LPLEKVQRLN RVSIPSVGTE NWGETQKLLL ENIQQSNQVS  120
IPSVNTENWG ETNMADASPR TDISTDADTD DKNQRFDGSL STALVASDSS DRSKDKMDQK  180
TLRRLAQNRE AARKSRLRKK AYVQQLESSR LKLTQLEQEL QRARQQGIFV SSSGDQSHSM  240
SGNGAMAFDV EYARWLEDQN RQINELRSAV NSHTGDTELR IIIDGIMAHY DEVFRLKSNA  300
AKADVFHLLS GMWKTPAERC FLWLGGFRSS ELLKLLVNQL EPLTDQQLVG IGNLQQSSQQ  360
AEDALSQGME ALQQSLAETL SSGSLGSSGS SGNVANYMGQ MAMAMGKLGT LEGFIRQADN  420
LRQQTLQQMQ RILTTRQSAR ALLAIHDYFS RLRALSSLWL ARPRE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.36150.0bud
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00349DAPTransfer from AT3G12250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G029800.9
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024446961.10.0transcription factor TGA2 isoform X1
RefseqXP_024446963.10.0transcription factor TGA2 isoform X1
RefseqXP_024446965.10.0transcription factor TGA2 isoform X1
SwissprotQ6IVC20.0TGAL1_ORYSJ; Transcription factor TGAL1
TrEMBLA0A2K2BRJ00.0A0A2K2BRJ0_POPTR; Uncharacterized protein
TrEMBLA0A385JHK20.0A0A385JHK2_POPTO; TGACG motif-binding factor 6
STRINGPOPTR_0001s06700.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-148TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]