PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G029800.8 | ||||||||
Common Name | POPTR_0001s06700g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bZIP | ||||||||
Protein Properties | Length: 466aa MW: 51552.8 Da PI: 6.1994 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 30 | 1.1e-09 | 179 | 220 | 4 | 45 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le +L++ ++L Potri.001G029800.8 179 QKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 220 5888*************************9777777666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 7.8E-9 | 176 | 239 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.415 | 178 | 222 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 9.0E-7 | 180 | 220 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14708 | 4.78E-22 | 180 | 232 | No hit | No description |
SuperFamily | SSF57959 | 7.5E-7 | 180 | 223 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.6E-7 | 181 | 224 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 183 | 198 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 1.0E-32 | 262 | 337 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009410 | Biological Process | response to xenobiotic stimulus | ||||
GO:0009627 | Biological Process | systemic acquired resistance | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 466 aa Download sequence Send to blast |
MPSFDPQLPI SNAICVEGST IHPHCATYFG VFLEDDAIDL SPGAVFNSAK ERTQAIPSDP 60 LTSGALDKKQ SSSVQVESQR LPLEKVQRLN RVSIPSVGTE NWGETQKLLL ENIQQSNQVS 120 IPSVNTENWG ETNMADASPR TDISTDADTD DKNQRFDGSL STALVASDSS DRSKDKMDQK 180 TLRRLAQNRE AARKSRLRKK AYVQQLESSR LKLTQLEQEL QRARQQGIFV SSSGDQSHSM 240 SGNGAMAFDV EYARWLEDQN RQINELRSAV NSHTGDTELR IIIDGIMAHY DEVFRLKSNA 300 AKADVFHLLS GMWKTPAERC FLWLGGFRSS ELLKLLVNQL EPLTDQQLVG IGNLQQSSQQ 360 AEDALSQGME ALQQSLAETL SSGSLGSSGS SGNVANYMGQ MAMAMGKLGT LEGFIRQADN 420 LRQQTLQQMQ RILTTRQSAR ALLAIHDYFS RLRALSSLWL ARPRE* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.3615 | 0.0 | bud |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00349 | DAP | Transfer from AT3G12250 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G029800.8 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024446961.1 | 0.0 | transcription factor TGA2 isoform X1 | ||||
Refseq | XP_024446963.1 | 0.0 | transcription factor TGA2 isoform X1 | ||||
Refseq | XP_024446965.1 | 0.0 | transcription factor TGA2 isoform X1 | ||||
Swissprot | Q6IVC2 | 0.0 | TGAL1_ORYSJ; Transcription factor TGAL1 | ||||
TrEMBL | A0A2K2BRJ0 | 0.0 | A0A2K2BRJ0_POPTR; Uncharacterized protein | ||||
TrEMBL | A0A385JHK2 | 0.0 | A0A385JHK2_POPTO; TGACG motif-binding factor 6 | ||||
STRING | POPTR_0001s06700.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12250.2 | 1e-148 | TGACG motif-binding factor 6 |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G029800.8 |
Entrez Gene | 18094348 |
Publications ? help Back to Top | |||
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