PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G018400.1 | ||||||||
Common Name | POPTR_0001s05580g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | AP2 | ||||||||
Protein Properties | Length: 531aa MW: 58793.6 Da PI: 6.7572 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34 | 7.5e-11 | 165 | 224 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g k + ++g ++ +++Aa+a++ a++k++g Potri.001G018400.1 165 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsrKGrQGTQCG-YDKEDKAARAYDLAALKYWG 224 57*******************6666644775337999999.88889*************98 PP | |||||||
2 | AP2 | 47.1 | 5.7e-15 | 269 | 318 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g Potri.001G018400.1 269 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 318 9***************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.68E-18 | 165 | 234 | No hit | No description |
SuperFamily | SSF54171 | 9.15E-13 | 165 | 234 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.2E-8 | 165 | 224 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-10 | 166 | 233 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.054 | 166 | 232 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.2E-21 | 166 | 238 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-6 | 167 | 178 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.30E-24 | 267 | 326 | No hit | No description |
SuperFamily | SSF54171 | 6.15E-18 | 267 | 327 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.9E-18 | 268 | 326 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.375 | 268 | 326 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-32 | 268 | 332 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-9 | 269 | 318 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-6 | 308 | 328 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 531 aa Download sequence Send to blast |
MNSNNWLSFP LSPTHPTLPA HLHASHPHQF SLGLVNDNME NPFQTQEWSL LNTQGNNEVP 60 KVADFLGVSK SENQSDLVAF NEIQASDSEY LFSSNSLLPV QNAVVAASTN YEFQENPSNL 120 QSLTLSMGSA SGKGSKCETS GDNITNSVEA AAPRRTLDTF GQRTSIYRGV TRHRWTGRYE 180 AHLWDNSCRR EGQSRKGRQG TQCGYDKEDK AARAYDLAAL KYWGTSTTTN FPISNYEKEL 240 EDMKNMTRQE FVASIRRKSS GFSRGASMYR GVTRHHQHGR WQARIGRVAG NKDLYLGTFS 300 TEEEAAEAYD IAAIKFRGLN AVTNFDMNRY DVKSILESNS LPIGGGAAKR LKEAQAIESS 360 QKREEMIALG SSYPYGSTSS SSRQQAYSLM QKPFEQPQPL LTLQNQDISQ YTQDSSFQQN 420 YLQTQLHLHQ LSAGSNFLHN NQSSQNPQYY NSYIQNNPTL LHGFSSGSYS TVGYLGNGLG 480 MATNSTGSNA VAEELPLVKI DYDMPSGGYG SWSGESVQGS NPGVFTMWNE * |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Accumulates in the basal embryo region that gives rise to hypocotyl, root, and root stem cells. Expressed in the root meristem throughout embryo development. {ECO:0000269|PubMed:15454085, ECO:0000269|PubMed:20190735}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, seedlings, flowers, and siliques. Also detected at low levels in leaves. In roots, specifically detected in the distal root meristem, including the QC. This tissue specificity is regulated by auxin gradient and depends on PIN proteins. {ECO:0000269|PubMed:15454085, ECO:0000269|PubMed:15635403, ECO:0000269|PubMed:15988559, ECO:0000269|PubMed:16424342, ECO:0000269|PubMed:20190735}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs). {ECO:0000250, ECO:0000269|PubMed:15454085, ECO:0000269|PubMed:15635403, ECO:0000269|PubMed:16424342, ECO:0000269|PubMed:20190735}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G018400.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin accumulation. {ECO:0000269|PubMed:15454085}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216409 | 1e-126 | AC216409.1 Populus trichocarpa clone POP024-J08, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002299238.2 | 0.0 | AP2-like ethylene-responsive transcription factor PLT1 isoform X1 | ||||
Swissprot | Q5YGP7 | 0.0 | PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2 | ||||
TrEMBL | A0A2K2BQZ1 | 0.0 | A0A2K2BQZ1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s05580.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4942 | 31 | 52 | Representative plant | OGRP112 | 17 | 209 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51190.1 | 0.0 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G018400.1 |
Entrez Gene | 7487036 |