PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G013200.1
Common NamePOPTR_0001s05070g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 305aa    MW: 32514.5 Da    PI: 9.811
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G013200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.31.1e-07108133227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         k +lC+ +     Ck+Gd+C+FaHg+
  Potri.001G013200.1 108 KSRLCNKYNTVEGCKFGDKCHFAHGE 133
                         6789999999999***********96 PP
2zf-CCCH34.73e-11271295126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +kt++C +f + G C +GdrC+FaHg
  Potri.001G013200.1 271 FKTKICENFNK-GSCTFGDRCHFAHG 295
                         69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.0423866IPR000571Zinc finger, CCCH-type
SMARTSM003561.73865IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-63964IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-74063IPR000571Zinc finger, CCCH-type
PfamPF146081.84663No hitNo description
Gene3DG3DSA:4.10.1000.104.6E-13103136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.22E-7105136IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.281106134IPR000571Zinc finger, CCCH-type
SMARTSM003560.0056106133IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-5108133IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.9E-14169249IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.107.3E-16177249IPR004088K Homology domain, type 1
SMARTSM003224.0E-11177247IPR004087K Homology domain
PROSITE profilePS5008414.131178242IPR004088K Homology domain, type 1
CDDcd001052.51E-13180242No hitNo description
PfamPF000131.1E-10180243IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.103.1E-16268301IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.26E-8270300IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-7270296IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.868270297IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-9271295IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MEFGGGHRKR TRNDAAFNGN GGHKKNRQEM ESFSTGIGSK SKPCTKFFST SGCPFGEGCH  60
FLHYVPGGFK AVSQMLNVGG SPALPPASRN QGVPTLSYQD RSSPPSVKSR LCNKYNTVEG  120
CKFGDKCHFA HGEWELGKAS AAPSYEDPRA MGPIPGRMSR HMEHPHQGHG AAASFGSSAT  180
TKISIDASLA GAIIGKNGVN SKHICRVTGA KLSIRDHEAD PKKRSIELEG SFDQISQASD  240
MVRQLISNVG QASGPPIKNQ AMHSSGGSNN FKTKICENFN KGSCTFGDRC HFAHGAEELR  300
KSGM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.31960.0bud| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G013200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ2396550.0FJ239655.1 Populus balsamifera isolate Gal08 hypothetical protein gene, partial cds.
GenBankFJ2396560.0FJ239656.1 Populus balsamifera isolate Gal08 hypothetical protein gene, partial cds.
GenBankFJ2396570.0FJ239657.1 Populus balsamifera isolate Gal09 hypothetical protein gene, partial cds.
GenBankFJ2396580.0FJ239658.1 Populus balsamifera isolate Gal09 hypothetical protein gene, partial cds.
GenBankFJ2396590.0FJ239659.1 Populus balsamifera isolate Gal10 hypothetical protein gene, partial cds.
GenBankFJ2396600.0FJ239660.1 Populus balsamifera isolate Gal10 hypothetical protein gene, partial cds.
GenBankFJ2396610.0FJ239661.1 Populus balsamifera isolate Gal11 hypothetical protein gene, partial cds.
GenBankFJ2396620.0FJ239662.1 Populus balsamifera isolate Gal11 hypothetical protein gene, partial cds.
GenBankFJ2396630.0FJ239663.1 Populus balsamifera isolate Gal12 hypothetical protein gene, partial cds.
GenBankFJ2396640.0FJ239664.1 Populus balsamifera isolate Gal12 hypothetical protein gene, partial cds.
GenBankFJ2396650.0FJ239665.1 Populus balsamifera isolate Gal13 hypothetical protein gene, partial cds.
GenBankFJ2396660.0FJ239666.1 Populus balsamifera isolate Gal13 hypothetical protein gene, partial cds.
GenBankFJ2396670.0FJ239667.1 Populus balsamifera isolate Gal15 hypothetical protein gene, partial cds.
GenBankFJ2396680.0FJ239668.1 Populus balsamifera isolate Gal15 hypothetical protein gene, partial cds.
GenBankFJ2396690.0FJ239669.1 Populus balsamifera isolate Nom01 hypothetical protein gene, partial cds.
GenBankFJ2396700.0FJ239670.1 Populus balsamifera isolate Nom01 hypothetical protein gene, partial cds.
GenBankFJ2396710.0FJ239671.1 Populus balsamifera isolate Nom02 hypothetical protein gene, partial cds.
GenBankFJ2396720.0FJ239672.1 Populus balsamifera isolate Nom02 hypothetical protein gene, partial cds.
GenBankFJ2396730.0FJ239673.1 Populus balsamifera isolate Nom03 hypothetical protein gene, partial cds.
GenBankFJ2396740.0FJ239674.1 Populus balsamifera isolate Nom03 hypothetical protein gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002299153.10.0zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R01e-111C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLB9GLM30.0B9GLM3_POPTR; C3H family protein
STRINGcassava4.1_012715m1e-178(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Representative plantOGRP10261756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-52C3H family protein