PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G005100.1
Common NamePOPTR_0001s04240g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 317aa    MW: 35259.6 Da    PI: 7.935
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G005100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.81.2e-182774148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT+eEdellv+++k+ G g+W+t +++ g+ R++k+c++rw +yl
  Potri.001G005100.1 27 RGPWTPEEDELLVNYIKKEGEGRWRTLPKKAGLLRCGKSCRLRWMNYL 74
                        89******************************99************97 PP
2Myb_DNA-binding45.91.3e-1485125648
                         HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  Potri.001G005100.1  85 DDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 125
                         69***************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-221876IPR009057Homeodomain-like
PROSITE profilePS5129424.1712278IPR017930Myb domain
SuperFamilySSF466896.24E-2924121IPR009057Homeodomain-like
SMARTSM007172.6E-142676IPR001005SANT/Myb domain
PfamPF002494.7E-162774IPR001005SANT/Myb domain
CDDcd001674.54E-122974No hitNo description
Gene3DG3DSA:1.10.10.601.4E-2377130IPR009057Homeodomain-like
PROSITE profilePS5129419.70279129IPR017930Myb domain
SMARTSM007176.1E-1379127IPR001005SANT/Myb domain
CDDcd001674.50E-1185125No hitNo description
PfamPF002492.8E-1385125IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0010468Biological Processregulation of gene expression
GO:0048354Biological Processmucilage biosynthetic process involved in seed coat development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MRKPTSATTA ESAAKTTPCC IKVGLKRGPW TPEEDELLVN YIKKEGEGRW RTLPKKAGLL  60
RCGKSCRLRW MNYLRPSVKR GQIADDEEDL ILRLHRLLGN RWSLIAGRIP GRTDNEIKNY  120
WNTHLSKKLI SQGIDPRTHK PLNPQSFDQS KPSLSKANLH QARLKEPIKN IVSSGLEEAT  180
SGSTRIINRE NEYFQNNINA HLDDQYHADH FIASHGYTSL LNYDGTSGMD LKGDQSLGIG  240
EADQDINSGT DDVFSFLNSL INEEALQQHQ ILNVPNVNCA PPSSDPFVSI AATTFGLGTG  300
WESTLMSSAF NQNESK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26251295108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Siliques. {ECO:0000269|PubMed:9839469}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G005100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF8110250.0KF811025.1 Populus tomentosa putative R2R3 MYB transcription factor MYB006 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002297634.10.0transcription repressor MYB5
SwissprotQ388502e-84MYB5_ARATH; Transcription repressor MYB5
TrEMBLB9GLF00.0B9GLF0_POPTR; Uncharacterized protein
STRINGPOPTR_0001s04240.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38943064
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.16e-83myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]