PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G002400.2 | ||||||||
Common Name | POPTR_0001s03970g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | WRKY | ||||||||
Protein Properties | Length: 132aa MW: 15021.3 Da PI: 7.627 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 48.3 | 2e-15 | 36 | 87 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dg++W+KYGqK +k+ + +rC ++C++kk+ e s+ p+ + i+Yeg+H h Potri.001G002400.2 36 EDGFEWKKYGQKFIKNI----GKFRCQKRNCMAKKRAEWSN--PENLRIVYEGSHSHA 87 7**************96....459**************998..**************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.7E-15 | 29 | 87 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 11.233 | 30 | 89 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.97E-15 | 32 | 87 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.6E-15 | 35 | 88 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.4E-15 | 36 | 86 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 132 aa Download sequence Send to blast |
MSEVSPTRET SMETEEDKEE QQQHTDRGRR RLVLPEDGFE WKKYGQKFIK NIGKFRCQKR 60 NCMAKKRAEW SNPENLRIVY EGSHSHASST QDSSSASSQG TPSSSAANQY NLYTQFFGNQ 120 PASSTHDQDH T* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G002400.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006368530.1 | 3e-83 | probable WRKY transcription factor 3 | ||||
TrEMBL | U5GSI9 | 8e-82 | U5GSI9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s03970.1 | 1e-82 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64810.1 | 5e-07 | WRKY DNA-binding protein 51 |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G002400.2 |
Entrez Gene | 18094278 |