PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pta013299 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
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Family | bHLH | ||||||||
Protein Properties | Length: 163aa MW: 18963.9 Da PI: 9.0435 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.9 | 8.5e-09 | 72 | 117 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 rE+ R dr+N++f eL ll + + +K++K++iL A +++L Pta013299 72 ACREKMRKDRLNDRFMELSILLEPG---RPPKMDKSAILSDALSLVNQL 117 679*********************8...89************9999888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.14E-12 | 58 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.655 | 66 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.2E-6 | 72 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-5 | 72 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.2E-11 | 73 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.32E-5 | 74 | 120 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MGSLQCNKWM SFLEDNLLED VGQPANSFVW PGQAINVHPD CSDSKNDKED REKLCPRKRP 60 REESCDKHGL KACREKMRKD RLNDRFMELS ILLEPGRPPK MDKSAILSDA LSLVNQLREK 120 AGELKDSNER LRQSNKELKT EKMSFVMKDK LKAEKKDWIT MKL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pta.34426 | 0.0 | root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed throughout development, mostly in vasculatures. {ECO:0000269|PubMed:17028341}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002962528.1 | 1e-43 | transcription factor ILR3 | ||||
Refseq | XP_002962764.1 | 1e-43 | transcription factor ILR3 | ||||
Swissprot | Q9FH37 | 8e-28 | ILR3_ARATH; Transcription factor ILR3 | ||||
Swissprot | Q9LTC7 | 2e-27 | BH034_ARATH; Transcription factor bHLH34 | ||||
TrEMBL | C0PR61 | 7e-82 | C0PR61_PICSI; Uncharacterized protein | ||||
STRING | EFJ35991 | 4e-43 | (Selaginella moellendorffii) | ||||
STRING | EFJ36227 | 4e-43 | (Selaginella moellendorffii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 3e-30 | bHLH family protein |