PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta013179

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

S1Fa-like

Protein Properties

Length: 90aa MW: 9870.72 Da PI: 10.4384

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-27749	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	122.9	1.1e-38	26	90	6	70
S1FA 6 veakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 + kG+nPGlivllvv g+ll+f+vgny+ly+yaqk+lP +kkkPvskkk+kreklkqG+++PGe Pta013179 26 TAGKGFNPGLIVLLVVVGVLLIFIVGNYVLYMYAQKTLPAKKKKPVSKKKMKREKLKQGISAPGE 90 456*************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04689	8.9E-38	27	90	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 90 aa Download sequence Send to blast
MDEDFSSQAD VDPSAFASQE RLLTKTAGKG FNPGLIVLLV VVGVLLIFIV GNYVLYMYAQ 60 KTLPAKKKKP VSKKKMKREK LKQGISAPGE

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.918	1e-152	root\| shoot\| xylem

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010104121.2	3e-25	DNA-binding protein S1FA
Refseq	XP_024026346.1	3e-25	DNA-binding protein S1FA
Swissprot	P42553	2e-15	S1FA1_ORYSJ; DNA-binding protein S1FA1
TrEMBL	W9SCA3	7e-23	W9SCA3_9ROSA; DNA-binding protein S1FA1
STRING	XP_010104121.1	1e-23	(Morus notabilis)