PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta013026
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family MYB_related
Protein Properties Length: 111aa    MW: 12508.9 Da    PI: 4.6328
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-49826PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-077431044
                     HHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding 10 ellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     + + +a + +G++   +W+ +++++g g++++++k ++
        Pta013026  7 QDFENALAIYGKDtpdRWHNVSSMVG-GKSPEEVKRHY 43
                     6799**********************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001672.75E-6647No hitNo description
PfamPF002497.5E-6643IPR001005SANT/Myb domain
SuperFamilySSF466898.97E-9752IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-4749IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MECRGEQDFE NALAIYGKDT PDRWHNVSSM VGGKSPEEVK RHYEILLEDL SCIEAGKVSI  60
PNYLFDIATD DEVPVHHKNA GGEGQVTVPG SSNNIVWTDE EQRVLRRLKI Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-229631973RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010254802.18e-25PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1732e-23RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLD5ADC11e-26D5ADC1_PICSI; Uncharacterized protein
STRINGXP_010254802.13e-24(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.27e-26RAD-like 6