PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pta011968 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 175aa MW: 20075.2 Da PI: 5.9536 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.4 | 2.4e-18 | 2 | 48 | 10 | 56 |
HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 eq+++Le+ Fe+ + p a ++eeLA lgL+ +q+ +WFqNrRak+k Pta011968 2 EQTRALENSFESGKIPEAGRKEELAGALGLQPTQIAIWFQNRRAKWK 48 8*********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 96.3 | 3e-31 | 2 | 86 | 9 | 93 |
HD-ZIP_I/II 9 eqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 eq ++LE+sFe+ + e rK+ela +Lglqp q+a+WFqnrRA++kt qlEkdy++L ++y +lk++ ++L +e+++Lr+e+++ Pta011968 2 EQTRALENSFESGKIPEAGRKEELAGALGLQPTQIAIWFQNRRAKWKTAQLEKDYRSLNQNYGSLKAQYHTLLEENKKLRSEIQR 86 9********************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 8.9E-10 | 1 | 54 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 16.196 | 1 | 50 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.24E-13 | 1 | 48 | No hit | No description |
SuperFamily | SSF46689 | 4.28E-17 | 2 | 62 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.5E-19 | 2 | 57 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.4E-15 | 2 | 48 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 1.2E-6 | 21 | 30 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 25 | 48 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.2E-6 | 30 | 46 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.0E-11 | 51 | 86 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MEQTRALENS FESGKIPEAG RKEELAGALG LQPTQIAIWF QNRRAKWKTA QLEKDYRSLN 60 QNYGSLKAQY HTLLEENKKL RSEIQRSGSI SKNGQSRHDK EVMGDGQTDF NAVQEKKVEC 120 YSFHNTEDNI RHQVCIEENC GHNALVAIEE EDCYRNMGGV SSFMFEDHWT PGFQG |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pta.1896 | 0.0 | root| shoot |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15150.1 | 4e-28 | homeobox 3 |