PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pta011694 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 185aa MW: 21499.4 Da PI: 8.7682 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 51.2 | 2.1e-16 | 37 | 92 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HH.HHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsae.ereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ + ++ LAk+l+L rqV vWFqNrRa+ k Pta011694 37 RKKLRLSKEQSALLEESFREHSTLNPQkQKNALAKQLNLRPRQVEVWFQNRRARTK 92 778899******************97526889**********************98 PP | |||||||
2 | HD-ZIP_I/II | 121.7 | 3.8e-39 | 37 | 128 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLep.erKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq++lLEesF+e+++L+p ++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk Pta011694 37 RKKLRLSKEQSALLEESFREHSTLNPqKQKNALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTEENRRLQKELQELR-ALK 128 69***********************945799*********************************************************9.565 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.985 | 33 | 94 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.1E-11 | 35 | 98 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.27E-16 | 36 | 102 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 9.9E-14 | 37 | 92 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.6E-16 | 37 | 92 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 9.88E-12 | 37 | 95 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 69 | 92 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 5.3E-22 | 94 | 137 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 6.4E-12 | 94 | 128 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MAVKRERERA FDLEAERDRT CDVSSRTSDE EEIGSTRKKL RLSKEQSALL EESFREHSTL 60 NPQKQKNALA KQLNLRPRQV EVWFQNRRAR TKLKQTEVDC EVLKRCCENL TEENRRLQKE 120 LQELRALKAA PQPCVIGQDN YYMPLPATTL TMCPSCERVA TMENSRSLQF SKSQISQFTQ 180 QSAAC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 35 | 41 | TRKKLRL |
2 | 86 | 94 | RRARTKLKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pta.12834 | 0.0 | root| shoot| xylem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024388907.1 | 4e-89 | homeobox-leucine zipper protein HAT4-like | ||||
Swissprot | A2YW03 | 7e-67 | HOX27_ORYSI; Homeobox-leucine zipper protein HOX27 | ||||
Swissprot | A2Z1U1 | 4e-67 | HOX11_ORYSI; Homeobox-leucine zipper protein HOX11 | ||||
Swissprot | P46665 | 5e-67 | HAT14_ARATH; Homeobox-leucine zipper protein HAT14 | ||||
Swissprot | Q6YPD0 | 7e-67 | HOX27_ORYSJ; Homeobox-leucine zipper protein HOX27 | ||||
TrEMBL | A9NX56 | 1e-124 | A9NX56_PICSI; Uncharacterized protein | ||||
STRING | PP1S31_269V6.1 | 2e-88 | (Physcomitrella patens) |