PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pta011672 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 186aa MW: 20464.8 Da PI: 5.3949 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 38.4 | 2.7e-12 | 93 | 171 | 20 | 99 |
NF-YC 20 elPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 ++P ar++++++++ d++ i ea l+ ka e f+ ++ + s+ h e +++ l +++v++ + ++fl d vp++ Pta011672 93 AFPTARVRRVIRSEGDIR-INVEAAFLINKAAEKFLEQFVVDSFEHILEETKNILSYKPFSSTVANQKRYEFLADFVPEK 171 69**************97.89********************************************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 9.9E-15 | 94 | 170 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.2E-7 | 94 | 148 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 6.04E-12 | 108 | 171 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 186 aa Download sequence Send to blast |
XAGDITLLVA LADFIFLPKM KAANTPKSDS SAQSSSDFSE EQENADEKTL PTKIATDNGA 60 YSSPNIGEAE TPSRPVKSSH IKVPRPETPT TLAFPTARVR RVIRSEGDIR INVEAAFLIN 120 KAAEKFLEQF VVDSFEHILE ETKNILSYKP FSSTVANQKR YEFLADFVPE KVKAADALAR 180 RASAEI |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pta.3095 | 0.0 | root| xylem |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024157006.1 | 8e-28 | chromatin accessibility complex protein 1 | ||||
TrEMBL | D5ACA9 | 1e-83 | D5ACA9_PICSI; Uncharacterized protein | ||||
STRING | XP_008225482.1 | 9e-26 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G07980.1 | 6e-20 | nuclear factor Y, subunit C10 |