PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pta011570 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
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Family | SBP | ||||||||
Protein Properties | Length: 190aa MW: 21621.4 Da PI: 9.9975 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 133.8 | 5.5e-42 | 67 | 143 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqve+C+adl++akey+rrh+vCe+hska vlv gl+qrfCqqCsrfh l+efDe+krsCrrrLa+hnerrrk+ Pta011570 67 ACQVEKCAADLADAKEYYRRHRVCEQHSKARIVLVLGLQQRFCQQCSRFHVLEEFDEAKRSCRRRLAGHNERRRKTP 143 5*************************************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 9.2E-35 | 60 | 129 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.949 | 65 | 142 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 8.11E-39 | 66 | 145 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 7.4E-32 | 68 | 141 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MDEVQVKVDI QSTNVSADEP RPAKRQGFEL AKSPENVASK STALSSPKKP KAASSSSSSS 60 PRAQPPACQV EKCAADLADA KEYYRRHRVC EQHSKARIVL VLGLQQRFCQ QCSRFHVLEE 120 FDEAKRSCRR RLAGHNERRR KTPSDSSVDR LDSNHHLNDN WLRHMKETDK MSIVLERNTT 180 AKVCKEIKNH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 4e-35 | 54 | 141 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pta.8734 | 0.0 | root| xylem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021682433.1 | 5e-43 | squamosa promoter-binding protein 1-like | ||||
Swissprot | Q38741 | 2e-38 | SBP1_ANTMA; Squamosa promoter-binding protein 1 | ||||
TrEMBL | A9NSA8 | 1e-113 | A9NSA8_PICSI; Uncharacterized protein | ||||
STRING | GSMUA_Achr4P23650_001 | 7e-42 | (Musa acuminata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53160.2 | 6e-39 | squamosa promoter binding protein-like 4 |
Publications ? help Back to Top | |||
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