PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta011439

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

NAC

Protein Properties

Length: 195aa MW: 22439.4 Da PI: 8.8496

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-31801	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	175.9	1.1e-54	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppG FhPtdeelv +yLkkkv+g+k+e ++i+evd+yk+ePwdLp k ++++++ +w+fFs+rd+ky++g+r+nrat++gyWkatgkd++v+s +++ Pta011439 6 LPPGSGFHPTDEELVADYLKKKVHGHKIER-DIIPEVDLYKCEPWDLPdKiCLQSKNLQWHFFSPRDRKYPNGSRTNRATEAGYWKATGKDRKVTS-QQS 103 79************************99.99***********5346666666**********************************.899 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 ++g+kktLvfy+grap ge+tdWvmhey+l Pta011439 104 TIGTKKTLVFYRGRAPLGERTDWVMHEYHL 133 9**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.71E-60	3	155	IPR003441	NAC domain
PROSITE profile	PS51005	57.1	6	155	IPR003441	NAC domain
Pfam	PF02365	1.5E-27	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MAQISLPPGS GFHPTDEELV ADYLKKKVHG HKIERDIIPE VDLYKCEPWD LPDKICLQSK 60 NLQWHFFSPR DRKYPNGSRT NRATEAGYWK ATGKDRKVTS QQSTIGTKKT LVFYRGRAPL 120 GERTDWVMHE YHLDEKECQA AGLQDSFVLC RVVKKNGLGT KSDDQSVAPT EKMIQMVQIT 180 THYLAIWLNI QYPVX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-54	1	161	12	171	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-54	1	161	12	171	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-54	1	161	12	171	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-54	1	161	12	171	NO APICAL MERISTEM PROTEIN
3swm_A	3e-54	1	161	15	174	NAC domain-containing protein 19
3swm_B	3e-54	1	161	15	174	NAC domain-containing protein 19
3swm_C	3e-54	1	161	15	174	NAC domain-containing protein 19
3swm_D	3e-54	1	161	15	174	NAC domain-containing protein 19
3swp_A	3e-54	1	161	15	174	NAC domain-containing protein 19
3swp_B	3e-54	1	161	15	174	NAC domain-containing protein 19
3swp_C	3e-54	1	161	15	174	NAC domain-containing protein 19
3swp_D	3e-54	1	161	15	174	NAC domain-containing protein 19
4dul_A	3e-54	1	161	12	171	NAC domain-containing protein 19
4dul_B	3e-54	1	161	12	171	NAC domain-containing protein 19
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in a few sieve element cells before enucleation and in phloem-pole pericycle cells. {ECO:0000269\|PubMed:25081480}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010270697.1	1e-84	PREDICTED: NAC domain-containing protein 45
Refseq	XP_029124457.1	7e-86	NAC domain-containing protein 86-like
Swissprot	Q9FFI5	3e-77	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	A0A0C9QTT7	3e-92	A0A0C9QTT7_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_10143_3084 transcribed RNA sequence
STRING	XP_010270697.1	4e-84	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	3e-83	NAC domain containing protein 28

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]