PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pta011379 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
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Family | NF-YC | ||||||||
Protein Properties | Length: 198aa MW: 22267.3 Da PI: 5.0239 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 159.2 | 6.4e-50 | 72 | 166 | 8 | 102 |
NF-YC 8 kqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprdelk 102 +++e++++fk+h+lPlarikki+k+dedvkmisaeaPvl+skacelfileltlrswlh+eenkrrtl+++dia a++r d+ dfl+divprde+k Pta011379 72 EEMEQVAEFKQHQLPLARIKKIMKSDEDVKMISAEAPVLFSKACELFILELTLRSWLHTEENKRRTLQRNDIAGAISRGDVLDFLLDIVPRDEVK 166 68******************************************************************************************875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 8.89E-30 | 72 | 156 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 8.8E-37 | 75 | 147 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.1E-21 | 84 | 147 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MEGNYPHLQS SATPPVSHGP SSLMHNSLFQ QQQPQMPLQH HQQQLQGVNA ASSPLHADPE 60 TAAADVLATA DEEMEQVAEF KQHQLPLARI KKIMKSDEDV KMISAEAPVL FSKACELFIL 120 ELTLRSWLHT EENKRRTLQR NDIAGAISRG DVLDFLLDIV PRDEVKDVMA AQQTMSQQLM 180 SQQPLMPDQP LMYQPPQQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 4e-49 | 72 | 162 | 5 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 134 | 140 | RRTLQRN |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pta.11563 | 0.0 | root| xylem |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A9NUT0 | 8e-86 | A9NUT0_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48590.1 | 2e-55 | nuclear factor Y, subunit C1 |