PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pta011312 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
|
||||||||
Family | ZF-HD | ||||||||
Protein Properties | Length: 200aa MW: 21970.5 Da PI: 7.5585 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 64.4 | 2.3e-20 | 1 | 38 | 22 | 60 |
ZF-HD_dimer 22 vDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 +DGCgEfmps geegt+++l+CaAC+CHRnFHRreve e Pta011312 1 MDGCGEFMPS-GEEGTPESLRCAACECHRNFHRREVEGE 38 6********9.999*********************9865 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 2.0E-18 | 1 | 35 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 17.156 | 1 | 34 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.9E-19 | 1 | 35 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 4.0E-13 | 2 | 43 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-31 | 101 | 173 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.81E-19 | 105 | 171 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.5E-26 | 113 | 169 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 200 aa Download sequence Send to blast |
MDGCGEFMPS GEEGTPESLR CAACECHRNF HRREVEGEEA QTACDVCYHK GLVSGSNLIP 60 LSFPPPAIGV LGRALPQIIA AAPVNNNNMR SSPAFAPSPE SEEQADGNLP SGKKRFRTKF 120 THEQKERMLA FAQRVGWRLQ KHEEAAVQSF CQEVGVKRHV LKVWMHNNKH AMATKPHADN 180 NNHNNDNTAA ANSSSNNSTP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-26 | 114 | 171 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pta.16256 | 0.0 | embryo| root |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007154109.1 | 6e-56 | hypothetical protein PHAVU_003G091100g | ||||
Refseq | XP_021684058.1 | 7e-56 | zinc-finger homeodomain protein 4-like | ||||
TrEMBL | D5ADH8 | 5e-55 | D5ADH8_PICSI; Uncharacterized protein | ||||
STRING | PP1S3_539V6.1 | 1e-54 | (Physcomitrella patens) | ||||
STRING | XP_007154109.1 | 2e-55 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G14440.2 | 3e-48 | homeobox protein 31 |