PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pta010963 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
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Family | ERF | ||||||||
Protein Properties | Length: 213aa MW: 23799.4 Da PI: 10.5582 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.8 | 1.8e-20 | 31 | 81 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr ++ +gr++AeIrdp + ++r++lg+f+taeeAa+a+++a+++l+g Pta010963 31 THFRGVRKRP-WGRFAAEIRDPLK---KTRVWLGTFDTAEEAARAYDNAARNLRG 81 589*******.**********743...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.07E-32 | 31 | 88 | No hit | No description |
Pfam | PF00847 | 1.1E-13 | 31 | 81 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-22 | 32 | 90 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 6.2E-32 | 32 | 89 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.655 | 32 | 89 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.8E-38 | 32 | 95 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-11 | 33 | 44 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-11 | 55 | 71 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MAVHTMQMAR MEMKREIGVC EQEASSAVKE THFRGVRKRP WGRFAAEIRD PLKKTRVWLG 60 TFDTAEEAAR AYDNAARNLR GTKAKTNFGP SPLHDGKPLF NNGFSAQKRD SLRRPGLCPK 120 QEPAVPVLPS PDVQASTCVN IGNLSPNPAV EKQTVSNKKP MVLFGTHLSV SPRNLLLQQQ 180 QKEEICRSQG RRQAPLWLDL NLPPVANDLE LLI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-21 | 28 | 88 | 1 | 62 | ATERF1 |
3gcc_A | 3e-21 | 28 | 88 | 1 | 62 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pta.5777 | 0.0 | embryo| root| xylem |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0A0S1M6 | 1e-119 | A0A0A0S1M6_PINKR; Ethylene-responsive element binding factor |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28360.1 | 1e-24 | ERF domain protein 12 |