PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pta010749 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
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Family | bHLH | ||||||||
Protein Properties | Length: 221aa MW: 24585.6 Da PI: 6.5678 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 21.4 | 4.5e-07 | 4 | 32 | 23 | 55 |
HHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 23 LrellPkaskapskKlsKaeiLekAveYIksLq 55 L +llP++ K +K++i+e+A+ YIk Lq Pta010749 4 LHTLLPHL----PAKADKSTIVEEAISYIKTLQ 32 7899***6....39******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 8.835 | 1 | 31 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-4 | 4 | 32 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-7 | 4 | 43 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.49E-7 | 4 | 43 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.04E-6 | 4 | 36 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
RPGLHTLLPH LPAKADKSTI VEEAISYIKT LQQSLHVLEN QRLDKARSAT TLEFELSNTF 60 HELQQQQHHV SAAAMRSSSE TPGFYHPLIP ECSTSSGFEP WISKQYSRTI SAGSPAIDHC 120 NFFQTWSSPN VVLSVCGDDA HMMICSSPPK QGLLTTIFYT LEKHRVDVVT AHISSDSYRS 180 MYMIHAQAHT MVNTGDQFLD SKSSEEAFRS AAGELVIYLS S |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A9NQC2 | 1e-139 | A9NQC2_PICSI; Uncharacterized protein |