PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pta010613 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
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Family | Dof | ||||||||
Protein Properties | Length: 225aa MW: 24947.6 Da PI: 6.4199 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 128.5 | 2e-40 | 130 | 190 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k l+cprCds +tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s+ Pta010613 130 PDKLLPCPRCDSLDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHST 190 78999*****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-30 | 127 | 187 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 7.6E-33 | 132 | 188 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.929 | 134 | 188 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 136 | 172 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MKDPGFKLFG KTIPMRDGEK NEGLSGSKLG HENTDNITET PARVAQVSDK DVGKEISPDL 60 GREGPHNSNP EETRSVTVIS DCGEDECKKS DEDLEREGGS TAIESDLKSE NLEEKEAKAS 120 ENEEKMLKKP DKLLPCPRCD SLDTKFCYYN NYNVNQPRHF CKNCQRYWTA GGTMRNVPVG 180 AGRRKNKHST SHYRHMMMAD GLATARADAP DGAAHHQVIP NAHSS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020274549.1 | 1e-59 | cyclic dof factor 3-like | ||||
TrEMBL | T2B8P6 | 1e-163 | T2B8P6_PINPS; Dof10 | ||||
STRING | VIT_14s0108g00980.t01 | 8e-57 | (Vitis vinifera) | ||||
STRING | XP_004299352.1 | 3e-57 | (Fragaria vesca) |