PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pta010498 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
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Family | GRAS | ||||||||
Protein Properties | Length: 229aa MW: 26430.5 Da PI: 6.2468 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 176.5 | 1.9e-54 | 1 | 223 | 145 | 373 |
GRAS 145 TgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveq 244 T+vg ++ e++ ++e+L fAe+l++pf f+v+ + edl+ ++L++k+gE++aVn +l ++ l+ ++ s++ ++L+l+++l+Pk+vvvv++ Pta010498 1 TAVGY----ESMEMHLIRENLCTFAENLNIPFTFQVVEIPQNEDLNRSMLNLKEGETIAVNYSLGMQGLF-SKDSIA----SILHLINRLRPKIVVVVDH 91 55555....778999*********************9999*****************************9.444444....5****************** PP GRAS 245 eadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkv 344 e + ++sF+++f+eal++y+ lf+slea + + e+ ++E+++++++i+nvv ++ ++ + e+l +Wr++++++GF+p+ +s+++ kqa++l r Pta010498 92 ENEQAGSSFAQKFMEALQFYALLFESLEAV-HMNMETIEMIEKFVMAPRICNVVEAAYRR-HREGENLPNWRSMFQASGFTPMMMSNFTHKQAESLSRSR 189 ***************************988.6788999******************9996.666788********************************9 PP GRAS 345 k.sdgyrve....eesgslvlgWkdrpLvsvSaW 373 + g+ e ++++ l+lgW+++ LvsvSaW Pta010498 190 QqRFGFCFEavkkQQEQILLLGWQRQILVSVSAW 223 97889876655544566677************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 22.437 | 1 | 199 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.7E-52 | 1 | 223 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
TAVGYESMEM HLIRENLCTF AENLNIPFTF QVVEIPQNED LNRSMLNLKE GETIAVNYSL 60 GMQGLFSKDS IASILHLINR LRPKIVVVVD HENEQAGSSF AQKFMEALQF YALLFESLEA 120 VHMNMETIEM IEKFVMAPRI CNVVEAAYRR HREGENLPNW RSMFQASGFT PMMMSNFTHK 180 QAESLSRSRQ QRFGFCFEAV KKQQEQILLL GWQRQILVSV SAWIVNNVV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 8e-17 | 20 | 223 | 170 | 374 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pta.7913 | 0.0 | root| xylem |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K0M6Y2 | 1e-161 | A0A0K0M6Y2_PINTB; HAM2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36710.1 | 2e-29 | GRAS family protein |