PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pta010372 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
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Family | GeBP | ||||||||
Protein Properties | Length: 234aa MW: 26936.6 Da PI: 10.2756 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 58.9 | 1.4e-18 | 54 | 145 | 4 | 97 |
DUF573 4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 + w+ +De+++L Gl+ f k+gk + i +++ +++ ++ ++s++ql++K r K Kf+ ++k +++ ++ +++h++ +++++k++Wg Pta010372 54 AQRWNPKDELAFLNGLLAF-CKRGKGFPKSIAPVFDHIRNTLDNHFSNRQLSDKCSRWKAKFRAAQDK-MKDNTFKYRNSHETATYNICKQLWG 145 556****************.889999999***************************************.888999******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 5.0E-17 | 55 | 145 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
RPGENGVLEP PTLKKTLHAV QQESPPKENK KKKAPKPEPV GTPHSSQKSL KKVAQRWNPK 60 DELAFLNGLL AFCKRGKGFP KSIAPVFDHI RNTLDNHFSN RQLSDKCSRW KAKFRAAQDK 120 MKDNTFKYRN SHETATYNIC KQLWGEQEEG GAENEENNED HSIGGGDGEN VLKTSMNGTE 180 KKKKRKPLLP KEKDGEEDMQ KPEDQEYQGP MNDKEDKKKK KKMKMDLKMR RPWL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 179 | 186 | EKKKKRKP |
2 | 180 | 185 | KKKKRK |
3 | 181 | 186 | KKKRKP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28040.1 | 1e-09 | DNA-binding storekeeper protein-related transcriptional regulator |