PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pta010214 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
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Family | DBB | ||||||||
Protein Properties | Length: 239aa MW: 26050.7 Da PI: 4.5431 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 17.3 | 1e-05 | 3 | 34 | 4 | 36 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36 ++C+ ++e + + +C+ + lC C ++H g Pta010214 3 TMCDFCGEIRSTVYCKADAASLCLPCDGQIH-G 34 58******99*******************99.4 PP | |||||||
2 | zf-B_box | 19.6 | 1.9e-06 | 47 | 87 | 5 | 42 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg...Htvvpl 42 C+ ++ +++ + C++ + +C++C ++H++ H+++++ Pta010214 47 LCDGCSVEPAAFSCNNHKLSFCHNCDRQSHSNapqHKRKSI 87 7*****************************989***99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 8.589 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.0E-7 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.23E-6 | 3 | 47 | No hit | No description |
PROSITE profile | PS50119 | 8.887 | 43 | 87 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.4 | 48 | 87 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MGTMCDFCGE IRSTVYCKAD AASLCLPCDG QIHGANALSK RHLRTLLCDG CSVEPAAFSC 60 NNHKLSFCHN CDRQSHSNAP QHKRKSISYY TGCPSPAELA ELWNCELDRQ GGDDKQGSSV 120 PGTRWGNSGK EDVSLETLLA SGIDVGFTQK FGPWMEPSVS SKVGLPPSSQ RNSNVNTRIF 180 DSEGSEGTMK LWDQNMQDLG ICADDDCCDA LNMSDVNLIF ENYEDIFGGP QVESSSMFX |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pta.20036 | 0.0 | embryo |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A9NUQ9 | 1e-109 | A9NUQ9_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48250.1 | 5e-40 | B-box type zinc finger protein with CCT domain |