PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pta010122 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
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Family | WOX | ||||||||
Protein Properties | Length: 242aa MW: 26997.8 Da PI: 7.2957 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 51.8 | 1.4e-16 | 54 | 114 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++t+e ++ Le++F++ +p++ee+ ++ ++l ++ ++ +++WFqN++a+ k+ Pta010122 54 KPRWNPTPEHIRLLESMFNSgVTNPTTEEIWRIRAQLeefgEVRDASIFYWFQNKKARTKQ 114 89*****************99*************************************996 PP | |||||||
2 | Wus_type_Homeobox | 95.2 | 5.6e-31 | 53 | 116 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++RW+Ptpe i++Le++++sG+ +P++eei ri+a+Lee+G+++d+ +fyWFQN+kaR +q++ Pta010122 53 SKPRWNPTPEHIRLLESMFNSGVTNPTTEEIWRIRAQLEEFGEVRDASIFYWFQNKKARTKQRH 116 689***********************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-7 | 35 | 114 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.01E-11 | 50 | 118 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 10.77 | 50 | 115 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.2E-5 | 52 | 119 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.26E-5 | 54 | 116 | No hit | No description |
Pfam | PF00046 | 3.0E-14 | 54 | 114 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MNPNRHWPSM FKVNPSASES QWGEASNPSA ISGHRQSYEG TSSKNEERSQ PESKPRWNPT 60 PEHIRLLESM FNSGVTNPTT EEIWRIRAQL EEFGEVRDAS IFYWFQNKKA RTKQRHSHLH 120 SGETSKSGSE KSKTDQSKEI IGVSEKTANS LGNTGESYSS IVPAAQFFTQ QDHYHLQINE 180 GISNDQCSYT DAVAATAGRG GIFNEGTSEE LKYGRSITVV INNVPFAVPV GPINVKAMFV 240 KM |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | D5LMH9 | 1e-106 | D5LMH9_PICAB; Putative wuschel homeobox protein WOX8/9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33880.1 | 2e-35 | homeobox-3 |