PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pta010042 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
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Family | GRAS | ||||||||
Protein Properties | Length: 244aa MW: 28229.2 Da PI: 7.9445 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 246.1 | 1.4e-75 | 2 | 244 | 132 | 373 |
GRAS 132 LasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLk 229 La+Rp gpp+lRiTg++ p++g +e++eetg+rL+++A+++gvpfe+++ +a+++e+l++eeL ++++E+l+Vn+ +l +llde+v ++s+r+ vL+ Pta010042 2 LANRPCGPPMLRITGIEFPQPGfrPAERIEETGRRLEDYAKSFGVPFEYQA-IATKWENLDVEELGLRSDEVLVVNCLGRLRNLLDETVVQDSPRNIVLN 100 89*******************9*****************************.7*********************************************** PP GRAS 230 lvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpl 329 ++s++P+v++ + +n++ F +rf eal +ysalfd+le+++pr++++r +E+e++grei nvvaceg+er er et+++W+ r ++aGF ++pl Pta010042 101 KIRSMNPRVFIQGVVNGAYNASFFITRFREALFHYSALFDALETTVPRDNQQRFLIEKEIFGREILNVVACEGSERLERPETYKQWQGRTQRAGFVQLPL 200 **************************************************************************************************** PP GRAS 330 sekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 + ++ ++ + +++++ + + v+e+ ++++lgWk+r++ ++S W Pta010042 201 DRSILSKSRDKVKTFYHKDFGVDEDGNWMLLGWKGRTIHALSTW 244 ****************889************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 43.479 | 1 | 225 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.9E-73 | 2 | 244 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
CLANRPCGPP MLRITGIEFP QPGFRPAERI EETGRRLEDY AKSFGVPFEY QAIATKWENL 60 DVEELGLRSD EVLVVNCLGR LRNLLDETVV QDSPRNIVLN KIRSMNPRVF IQGVVNGAYN 120 ASFFITRFRE ALFHYSALFD ALETTVPRDN QQRFLIEKEI FGREILNVVA CEGSERLERP 180 ETYKQWQGRT QRAGFVQLPL DRSILSKSRD KVKTFYHKDF GVDEDGNWML LGWKGRTIHA 240 LSTW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 3e-30 | 2 | 244 | 150 | 378 | Protein SCARECROW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pta.16979 | 1e-100 | root| shoot| xylem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in cotyledons, leaves and flowers, and in the elongation zone in root. {ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010937596.1 | 1e-127 | scarecrow-like protein 9 | ||||
Refseq | XP_010937597.1 | 1e-127 | scarecrow-like protein 9 | ||||
Refseq | XP_029123935.1 | 1e-127 | scarecrow-like protein 9 | ||||
Swissprot | O80933 | 1e-106 | SCL9_ARATH; Scarecrow-like protein 9 | ||||
TrEMBL | A3E2G2 | 1e-176 | A3E2G2_PINRA; SCARECROW-like protein 1 | ||||
STRING | ERN07921 | 1e-125 | (Amborella trichopoda) | ||||
STRING | XP_008799752.1 | 1e-125 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-109 | GRAS family protein |