PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pta009809 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
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Family | G2-like | ||||||||
Protein Properties | Length: 252aa MW: 27889.6 Da PI: 8.1643 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 104.2 | 7.5e-33 | 60 | 115 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH++Fv+a++qLGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Pta009809 60 KARRCWSPELHRKFVNALQQLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 115 68****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.19E-18 | 57 | 118 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.006 | 57 | 117 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.4E-30 | 57 | 118 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.6E-27 | 60 | 115 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.4E-8 | 62 | 113 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
XLGLSSAEPE ETRHHGGLNN NKRCINEEGD QNEGCIVPCN RNMSSTDSHT PQQLGQTQRK 60 ARRCWSPELH RKFVNALQQL GGSQVATPKQ IRELMKVDGL TNDEVKSHLQ KYRLHTRRLP 120 SSGCPQAMGT VTQAPQLVVL GGIWVPPEYA THHGHAAPEL YTALPNIASQ SHAARYYRQR 180 QPAIDGNSLQ EFCTSYSRNH VESSSQPQSD GSPQSSSSMS MEADQDGKSG SQSFHGSWKE 240 KEMGNFVRAP QL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 5e-15 | 60 | 113 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-15 | 60 | 113 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-15 | 60 | 113 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-15 | 60 | 113 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010049950.1 | 9e-52 | PREDICTED: myb family transcription factor EFM isoform X2 | ||||
TrEMBL | A0A059CX25 | 2e-50 | A0A059CX25_EUCGR; Uncharacterized protein | ||||
STRING | evm.model.supercontig_127.55 | 1e-50 | (Carica papaya) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03500.1 | 1e-47 | G2-like family protein |