PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pta009797 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
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Family | NF-YC | ||||||||
Protein Properties | Length: 253aa MW: 28835.2 Da PI: 7.5568 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 166.9 | 2.5e-52 | 70 | 173 | 2 | 102 |
NF-YC 2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 + fw +q ie++ df+nh+lPlarikki+k+dedv+misaeaPv+++kace+fi eltlr+w h+eenkrrtl+k+diaaa++rtdifdflvdivpr Pta009797 70 VDFFWGNQmqgIEQSVDFRNHSLPLARIKKIMKSDEDVRMISAEAPVVFAKACEMFINELTLRAWFHTEENKRRTLQKNDIAAAIARTDIFDFLVDIVPR 169 678**99988889*************************************************************************************** PP NF-YC 99 delk 102 delk Pta009797 170 DELK 173 *975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.68E-32 | 52 | 163 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.5E-23 | 91 | 154 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 8.0E-38 | 92 | 169 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MPIRYDVTPY QAAQNLAPVA RGTFPQHQTS SYVQAAHAFP QSAHHNQLAY QHQLHQHQQQ 60 QLHHHQKQQV DFFWGNQMQG IEQSVDFRNH SLPLARIKKI MKSDEDVRMI SAEAPVVFAK 120 ACEMFINELT LRAWFHTEEN KRRTLQKNDI AAAIARTDIF DFLVDIVPRD ELKEDQVINL 180 GTPTASLSVG SSSSNAGGAN SFPFYYLPNQ HSAPRGVVVG KPMDPAIYMQ QPRSPVAYMH 240 NMLQRGYMHT DEX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 8e-54 | 76 | 169 | 2 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 141 | 147 | RRTLQKN |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pta.13987 | 0.0 | root| shoot| xylem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. Present in etiolated seedlings. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:17322342}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000250, ECO:0000269|PubMed:17322342}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008356118.2 | 8e-80 | nuclear transcription factor Y subunit C-2-like | ||||
Swissprot | Q9FMV5 | 3e-64 | NFYC4_ARATH; Nuclear transcription factor Y subunit C-4 | ||||
TrEMBL | A9NTJ8 | 1e-108 | A9NTJ8_PICSI; Uncharacterized protein | ||||
STRING | XP_008346078.1 | 4e-79 | (Malus domestica) | ||||
STRING | XP_008356118.1 | 4e-79 | (Malus domestica) | ||||
STRING | XP_008372003.1 | 4e-79 | (Malus domestica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 3e-63 | nuclear factor Y, subunit C2 |