PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pta009571 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
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Family | NF-YC | ||||||||
Protein Properties | Length: 260aa MW: 29027.6 Da PI: 6.9988 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 144.6 | 2.3e-45 | 73 | 173 | 4 | 101 |
NF-YC 4 sfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprde 100 w++q ie+a +f+nh++Plarikki+k+de+v+misaeaPv+++kace+fi eltlr+w h+ e+krrtl+k+di +a++ +d+fdfl+d+ prd+ Pta009571 73 ICWANQlqgIEEAVEFRNHSFPLARIKKIMKSDEHVRMISAEAPVVFAKACEMFINELTLRAWSHTGETKRRTLQKNDIVEAINGADMFDFLIDNFPRDD 172 5799998889****************************************************************************************98 PP NF-YC 101 l 101 l Pta009571 173 L 173 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 8.54E-28 | 61 | 164 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 1.8E-34 | 85 | 155 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.5E-22 | 92 | 155 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MDQQSWRQHM AVQNCGANAT FFQSPQILPT IPHGMFQQPP TSSNAHASAL SLSAHHNQLG 60 YHHQKQQQQE VEICWANQLQ GIEEAVEFRN HSFPLARIKK IMKSDEHVRM ISAEAPVVFA 120 KACEMFINEL TLRAWSHTGE TKRRTLQKND IVEAINGADM FDFLIDNFPR DDLKEDQLTN 180 LATPASSISV GSCSSNAGGV NSFPYYYLPN HHSAPHGVIV GKPVDPAIYM QQSGASVGYV 240 QNMLQRGFMY TEKSRSPNSG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 7e-44 | 77 | 170 | 2 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 142 | 148 | RRTLQKN |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pta.15958 | 0.0 | root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002284851.1 | 4e-62 | PREDICTED: nuclear transcription factor Y subunit C-9 isoform X5 | ||||
Refseq | XP_010659832.1 | 4e-62 | PREDICTED: nuclear transcription factor Y subunit C-9 isoform X4 | ||||
Refseq | XP_010659833.1 | 4e-62 | PREDICTED: nuclear transcription factor Y subunit C-9 isoform X5 | ||||
Swissprot | Q8LCG7 | 3e-53 | NFYC2_ARATH; Nuclear transcription factor Y subunit C-2 | ||||
TrEMBL | A9NTJ8 | 8e-96 | A9NTJ8_PICSI; Uncharacterized protein | ||||
STRING | VIT_14s0128g00250.t01 | 1e-61 | (Vitis vinifera) |
Publications ? help Back to Top | |||
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