PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Pta009542 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
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Family | HD-ZIP | ||||||||||||
Protein Properties | Length: 261aa MW: 29319 Da PI: 7.7385 | ||||||||||||
Description | HD-ZIP family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.4 | 5.6e-19 | 187 | 241 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F++n+ ++ ++++ LAkkl+L rqV vWFqNrRa+ k Pta009542 187 RKKLRLSKEQSALLEESFKENSSLNPKQKQALAKKLNLRPRQVEVWFQNRRARXK 241 778899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 107.7 | 8.6e-35 | 187 | 258 | 1 | 72 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkrayda 72 +kk+rlskeq++lLEesF+e++ L+p++K++la++L+l+prqv+vWFqnrRAR k+kq+E+d+e+Lkr+++ Pta009542 187 RKKLRLSKEQSALLEESFKENSSLNPKQKQALAKKLNLRPRQVEVWFQNRRARXKLKQTEVDCEFLKRCCEX 258 69********************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 5.8E-10 | 29 | 137 | IPR006712 | HD-ZIP protein, N-terminal |
SuperFamily | SSF46689 | 2.44E-18 | 181 | 244 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.67 | 183 | 243 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.3E-17 | 185 | 247 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.47E-18 | 187 | 244 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.2E-18 | 187 | 241 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.8E-16 | 187 | 241 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 218 | 241 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
CLFLSSLLHH QSIFPWRFYI LKKQMGMDME DCNTGLGLGM SIGLGMNLMR EDLQSHRHHV 60 NGPPVQLDLL PLAPVLPSRD LPWGKTSPGT DGERSAGESK ATVPRRIDVN KLPASCYYNE 120 DTGTINVSSP NSALSSFHVD SGGAINAESS CYGMSVKRER EATEELEAER ACSRVSDEEA 180 DQEGGTRKKL RLSKEQSALL EESFKENSSL NPKQKQALAK KLNLRPRQVE VWFQNRRARX 240 KLKQTEVDCE FLKRCCEXXX X |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 185 | 191 | TRKKLRL |
2 | 235 | 243 | RRARXKLKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pta.11488 | 0.0 | root| shoot| xylem |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018848896.1 | 1e-57 | PREDICTED: homeobox-leucine zipper protein HOX11 isoform X1 | ||||
TrEMBL | A9NKN4 | 1e-164 | A9NKN4_PICSI; Uncharacterized protein | ||||
STRING | Lus10004161 | 3e-57 | (Linum usitatissimum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17460.1 | 9e-34 | Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein |