PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta009120

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

Nin-like

Protein Properties

Length: 274aa MW: 31068.9 Da PI: 10.079

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-56799	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	85.3	5.3e-27	116	165	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i l+dl+kyF+ pi++A+++L+v+lTvLKr+CR++GI+RWPhRkiksl Pta009120 116 SNIALKDLAKYFDVPITEASRSLKVGLTVLKRKCREFGIPRWPHRKIKSL 165 69**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	19.111	100	185	IPR003035	RWP-RK domain
Pfam	PF02042	1.9E-22	117	165	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
XQPITPYLEG CSSRHPNEVS SITCNNSRCL EKENHTADQK SSLSIADMAV FQSIERSHAP 60 QSSKNDASED SSMLCCKKTN VELPSSAGVK GQKRRASNEE KDENRRIHRA PTQRVSNIAL 120 KDLAKYFDVP ITEASRSLKV GLTVLKRKCR EFGIPRWPHR KIKSLDSLIQ DLQEEAKRQE 180 REDEAAAMAA MKRTRILETE RQKIEKKPGI DIQKDTKRFR QDIFKRKHKA RALKKKYDSS 240 NSNSEDGDPS EEVPSVSTIL TLMIDKARTS PSTN

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027193148.1	4e-62	protein RKD5 isoform X1
Swissprot	O81791	5e-47	RKD5_ARATH; Protein RKD5
TrEMBL	A0A3Q7XWX6	8e-61	A0A3Q7XWX6_CICAR; protein RKD5 isoform X1
STRING	XP_007157999.1	7e-60	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	2e-41	RWP-RK domain-containing protein

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]