PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta009100
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family HB-other
Protein Properties Length: 274aa    MW: 31066.4 Da    PI: 8.7237
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-10653PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox14.27.7e-0582144656
                S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS
   Homeobox   6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56 
                +ftk+++e++e++ e+    +p ++  + LA+k            ++ +qV  WF  +R  +k
  Pta009100  82 RFTKKEVEQMEKALEEikGATPAQDVVQSLAEKFnaaperagkvPVQAKQVXXWFNHKRRPQK 144
                79*************76699**********************9999**********9997655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-465144IPR009057Homeodomain-like
PROSITE profilePS500719.44274146IPR001356Homeobox domain
SuperFamilySSF466891.6E-581146IPR009057Homeodomain-like
PfamPF167191.4E-20188268IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
XKRVIHRPXX XKANFKRSPI GPHENPPTRW LFAFLLLLCA WDVTPTDIAL NELKKFKAEI  60
NWKRKEFEQD GTTPSSESQY FRFTKKEVEQ MEKALEEIKG ATPAQDVVQS LAEKFNAAPE  120
RAGKVPVQAK QVXXWFNHKR RPQKAKGDLM PMPSNSTPSP LNDCPAKSAT ANSDKIPSEK  180
EPSDAPEWEF EARSSKDGAW YDVATFLTHR ILESGEPEVR VRFAGFGAEE DXWVNVRXAV  240
RLRSLPCEAT DCVAIKPGDL ILCFRGKQGT VYLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iup_A2e-25190268684SAWADEE HOMEODOMAIN HOMOLOG 1
4iup_B2e-25190268684SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_A2e-25190268684SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B2e-25190268684SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A2e-25190268684SHH1 SAWADEE
4iur_B2e-25190268684SHH1 SAWADEE
4iut_A2e-25190268684SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B2e-25190268684SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A2e-25190268684SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B2e-25190268684SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A2e-25190268684SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B2e-25190268684SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.7060.0root| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010275167.13e-66PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
RefseqXP_010275168.13e-66PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
TrEMBLC0PRY11e-121C0PRY1_PICSI; Uncharacterized protein
STRINGXP_010275166.11e-65(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.32e-55sequence-specific DNA binding transcription factors;sequence-specific DNA binding