PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta008892

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

NF-YC

Protein Properties

Length: 281aa MW: 31295.3 Da PI: 5.6567

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-51404	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	57.8	2.5e-18	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P +rikki++aded+ +i+ +P l+sk+ elf+ +l r++ + + +t+ s ++++v r ++fdfl +iv + Pta008892 6 DTRFPASRIKKIMQADEDIGKIAQAVPLLVSKSLELFLQDLCDRTYEITLQRGTKTVSASHLKQCVHRYNVFDFLREIVNK 86 5789************************************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	6.9E-26	2	72	IPR009072	Histone-fold
SuperFamily	SSF47113	2.01E-20	3	89	IPR009072	Histone-fold
Pfam	PF00808	1.5E-19	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MKKKLDTRFP ASRIKKIMQA DEDIGKIAQA VPLLVSKSLE LFLQDLCDRT YEITLQRGTK 60 TVSASHLKQC VHRYNVFDFL REIVNKVPDM GGSDAATGEE RNGGRRRKAQ EGDENESDED 120 EVKRAXDGND LIKGAHHGSG RGRGRRGRGR GSRGGSSGRN GITVEKFEDE DLDLSSEHSE 180 KQEKVSEIFT DVNTETRETK VAVNLVSTPV VRDFDLNMEL DESGVVASMP TQPAVKLEHH 240 PSDAANVPVI VKEADEFPSD VPIVQHPIKQ EEQYPNWSHS X

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	1e-22	2	71	5	74	Transcription Regulator NC2 alpha chain
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.13559	0.0	root\| xylem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022029984.1	4e-64	dr1-associated corepressor-like
TrEMBL	A0A0D6R6F9	2e-64	A0A0D6R6F9_ARACU; Uncharacterized protein