PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta008889
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family bHLH
Protein Properties Length: 281aa    MW: 31286.8 Da    PI: 9.782
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-45964PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH345.3e-11180229255
                HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                rr   e E+rRRd++++++ +L++ lP +    ++K sK++ L +A+ +Ik+L+
  Pta008889 180 RRQRIESEQRRRDELREGYRRLKDSLPVS----NQKSSKVSLLDRATTHIKYLE 229
                5567899*********************9....9******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.23E-13175247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-13175252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.529178228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-8180229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-8184234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.06E-9186229No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MEGPLEHLSF EHRKTPELMD NAYTYDPYSG LEYMGFPNSP SAIGSISLAT YVPSPRVGSM  60
PIAADYPTYT SGGSYVATPS RPYTPSSGVY PAALANLSPG ELSSDSMQSG RRSRGTVRSP  120
SPPLSRSLRY NPIAQPPSRV TRDRTKKKSK SSDSDDDDDF QPVTPPSHET GPSRRREEIR  180
RQRIESEQRR RDELREGYRR LKDSLPVSNQ KSSKVSLLDR ATTHIKYLEM TQSQFSMRLQ  240
QAESETQRLR QVNEALMLGT AEQRQAVAAA AVAAVSQHSV F
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLF8QF305e-81F8QF30_SERL3; Uncharacterized protein
STRINGXP_007312976.13e-81(Serpula lacrymans)