PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta008865
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family C2H2
Protein Properties Length: 282aa    MW: 32511 Da    PI: 5.7797
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-74754PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.17.3e-065074123
               EEET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
               y+C    Cgk+F+ ks+ +rH+  H
  Pta008865 50 YQCAqsGCGKTFKYKSEANRHLIIH 74
               99*******************9988 PP
2zf-C2H226.81.3e-0880104123
                EEET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                y+C+   C+ksF+r+++L+ H+r+H
  Pta008865  80 YSCSfvGCNKSFKRQETLEEHMRVH 104
                89*********************99 PP
3zf-C2H214.69.3e-05110134123
                EEET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                ++C+   Cg++F +k  L+ H  tH
  Pta008865 110 FSCNesGCGRRFVSKPALRYHKLTH 134
                89********************999 PP
4zf-C2H218.45.9e-06140166123
                EEET..TTTEEESSHHHHHHHHHH..T CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt..H 23 
                + C    C+ksF + s+Lk+H+++  H
  Pta008865 140 FMCDieGCDKSFLTMSHLKQHQMSglH 166
                789999****************97666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.5E-74669IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.575079IPR007087Zinc finger, C2H2
SMARTSM003550.00415074IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805274IPR007087Zinc finger, C2H2
SuperFamilySSF576679.36E-1461118No hitNo description
Gene3DG3DSA:3.30.160.604.5E-1470101IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF000962.4E-680104IPR007087Zinc finger, C2H2
SMARTSM003559.3E-680104IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.98380109IPR007087Zinc finger, C2H2
PROSITE patternPS00028082104IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.5E-10102131IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.41E-10109162No hitNo description
SMARTSM003554.4E-4110134IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.655110139IPR007087Zinc finger, C2H2
PROSITE patternPS000280112134IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.5E-9132162IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.404140171IPR007087Zinc finger, C2H2
SMARTSM003550.014140166IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280142166IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
XLHLMEDNTF DFLNDFQSIT YSPLPELFEK ETSQEVEHFV EIMQNGKRIY QCAQSGCGKT  60
FKYKSEANRH LIIHQKGKPY SCSFVGCNKS FKRQETLEEH MRVHGGNLPF SCNESGCGRR  120
FVSKPALRYH KLTHKNSREF MCDIEGCDKS FLTMSHLKQH QMSGLHSSRS PSDVSGPYKR  180
FRTESVSGLS ESTLASSEKS PSSEYMQEMY ELLQNTLAEN QTLKERLKEN EQSNISSDFE  240
GQYSFQGAEP VSFSDIVDPS VFLDEYEMKV FEFLNENDKS DF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C3e-16411634121PROTEIN (YY1 ZINC FINGER DOMAIN)