PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta008780
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family NF-YA
Protein Properties Length: 285aa    MW: 30736.1 Da    PI: 9.4003
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-76483PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA99.24.2e-31104159258
  CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                 p+YVNaKQy +Il+RRq+Rak+e+e+kl  ksr+pylheSRh hAlrR+Rg+gGrF
  Pta008780 104 PPVYVNAKQYYGILRRRQSRAKAESENKL-VKSRRPYLHESRHLHALRRARGCGGRF 159
                59***************************.**************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.1E-36101162IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.14102162IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.3E-26105159IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006166.2E-23105127IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860107127IPR018362CCAAT-binding factor, conserved site
PRINTSPR006166.2E-23136159IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MTTKLGTESS PSDEQQKQPL HQQQVPPTGI SPAHAEFMTR QTQLELGHTG TDTLWQARTA  60
YPYPDPFYGN YVAAYGAQAM IPPHMLGVPQ AGLPLPPSDA VEEPPVYVNA KQYYGILRRR  120
QSRAKAESEN KLVKSRRPYL HESRHLHALR RARGCGGRFL NTKKDGNNQE VVSGDQDSHD  180
SAGQDNKVVN PDAGKDVALQ VSDRMQRTDG VAFIGNGIST PHPGTVAPGQ VGVAVSVSNG  240
AHYNYPQRRG FHSSAFHSLS SGKAESGQVG GMVSNGGHHT AVATQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-19103163262NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.124831e-179root| shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024388758.15e-70nuclear transcription factor Y subunit A-7-like isoform X1
TrEMBLA0A0K0M7400.0A0A0K0M740_PINTB; NF-YA7
STRINGPP1S31_299V6.12e-69(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.11e-46nuclear factor Y, subunit A7