PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta008543
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family NF-YA
Protein Properties Length: 293aa    MW: 32111.6 Da    PI: 8.7455
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-13174PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA105.93.3e-33111167158
  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                +ep+YVNaKQy++Il+RRq Rak+e+e+kl +k+rkpylheSRh hA++R+Rg+gGrF
  Pta008543 111 EEPVYVNAKQYHGILRRRQLRAKAESENKL-IKTRKPYLHESRHLHAMKRARGCGGRF 167
                69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.0E-38109170IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115239.13110170IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.7E-28112167IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.4E-23113135IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860115135IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.4E-23144167IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
XKLLFSRSLK VKLCWQEQEE CPCQTSYSGA NGEKQHQHQP TKSIIGSAPT EYLVPHAQLD  60
FNHSIACAAY PYADPYFGGI LAAYPAQAMI HPNMLGVQQA RMPLPLDMTE EEPVYVNAKQ  120
YHGILRRRQL RAKAESENKL IKTRKPYLHE SRHLHAMKRA RGCGGRFLNT KKLEDSKANV  180
DNGKTPQGHT AHAGSSSRSE VLQSENGNGN STQEVHGACG MSGSEVTSIA QSSENGTTYQ  240
YSHTNGAYLN HYQHPHFHIS AFHPLSSGGE EGSSAKGGSI ISGGSQQRVV VIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-21111183273NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.170411e-143root| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024388759.16e-80nuclear transcription factor Y subunit A-9-like isoform X2
TrEMBLC0PQJ90.0C0PQJ9_PICSI; Uncharacterized protein
STRINGPP1S42_174V6.11e-77(Physcomitrella patens)