PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta008448
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family GRAS
Protein Properties Length: 297aa    MW: 33349.8 Da    PI: 6.4197
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-33263PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS389.14.9e-119229584374
       GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
                f++++P+lkf+h++aNqaIl+a++g+++vH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+++ +++l+e+g rL++fAe+++v+f+f+  va
  Pta008448   2 FYQTCPYLKFAHFIANQAILDAFSGHQQVHVIDFNLKQGIQWPALIQALALRPGGPPAFRLTGIGPPQPDGTDALQEVGTRLHQFAESVNVKFSFRGYVA 101
                9************************************************************************************************999 PP

       GRAS 184 krledleleeLrvkp.gEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                ++l+d+++++L+ +p  Ea+aVn++l+lhrll+++ + +  ++d+vL  ++sl+Pk+++vveqeadhn++ Fl+rf+eal+yys++fdslea   ++++e
  Pta008448 102 TSLADIKPWMLDARPeLEAVAVNSILELHRLLEDPIPGRPsAIDRVLASIWSLKPKILTVVEQEADHNRPVFLDRFTEALHYYSTVFDSLEARGLQAQSE 201
                9**************99*****************98765449************************************************9988888899 PP

       GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                ++++++++lgrei+n+vace +er+erhe l +W+ rl++aGF p+pl+++a kqa++ll+ ++ ++gyrvee++g+l+lgW++rpL+++SaW+
  Pta008448 202 EQVMSEVYLGREICNIVACERSERVERHEPLLNWSVRLRNAGFWPIPLGSNAFKQASMLLSLFSgGEGYRVEENNGCLTLGWHSRPLIAASAWQ 295
                99*******************************************************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.6151274IPR005202Transcription factor GRAS
PfamPF035141.7E-1162295IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
XFYQTCPYLK FAHFIANQAI LDAFSGHQQV HVIDFNLKQG IQWPALIQAL ALRPGGPPAF  60
RLTGIGPPQP DGTDALQEVG TRLHQFAESV NVKFSFRGYV ATSLADIKPW MLDARPELEA  120
VAVNSILELH RLLEDPIPGR PSAIDRVLAS IWSLKPKILT VVEQEADHNR PVFLDRFTEA  180
LHYYSTVFDS LEARGLQAQS EEQVMSEVYL GREICNIVAC ERSERVERHE PLLNWSVRLR  240
NAGFWPIPLG SNAFKQASML LSLFSGGEGY RVEENNGCLT LGWHSRPLIA ASAWQRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A6e-552294101377Protein SCARECROW
5b3h_D6e-552294101377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006383329.11e-154DELLA protein GAI
RefseqXP_011021384.11e-154PREDICTED: DELLA protein GAI-like
SwissprotQ84TQ71e-148GAI_GOSHI; DELLA protein GAI
TrEMBLX5CHV10.0X5CHV1_PINTB; DPL
STRINGPOPTR_0005s14540.11e-154(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-143GRAS family protein