PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta008074

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

GRAS

Protein Properties

Length: 315aa MW: 35986 Da PI: 7.3922

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-52969	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	373.5	2.7e-114	3	315	59	374
GRAS 59 elykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..ske 156 ++yk+l+++e + s+e l+++++f++++P++kf+++ aN I+ea++ ++rvHiiDf+i G+QW++ +qa+a+R++g+p++RiTgv++p s+ + + Pta008074 3 HIYKTLKCKEPT---SAELLSYMQIFYKICPYFKFGYMSANAVIVEALNDKDRVHIIDFQIALGTQWVPVIQAFAARQGGSPHVRITGVDDPVSEfaRGQ 99 799******9...9************************************************************************99999* PP GRAS 157 eleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256 l+ +g+rL+k+Ae+ +vpfef++l +d++ ++L+++pgEalaVn++l lh+++desvs++++rd+++++vk+ P vv++veqea++n+++F+ r Pta008074 100 GLQMVGQRLSKLAETYQVPFEFHAL-PVYASDVHADMLDIRPGEALAVNFHLVLHHIPDESVSTNNHRDRLIRMVKGFAPSVVTLVEQEANTNTARFFPR 198 **********************5.88899***************************************************************** PP GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesg 356 f+e+l+yy+a+f+sl+ +lpres+er++vE+++l+r+ivn++acegaer+erhe ++kWr+rl++aGFk+ +ls+++++++k l+ ++++ yrv e+++ Pta008074 199 FMETLSYYTAMFESLDLTLPRESKERVSVEQHCLARDIVNIIACEGAERVERHELFGKWRSRLTMAGFKSHALSSRVNATIKVALEFYNQN-YRVVEKDD 297 **********************************************************************************99966.**** PP GRAS 357 slvlgWkdrpLvsvSaWr 374 l+lgW +r L+++SaW+ Pta008074 298 VLYLGWLGRDLYVFSAWK 315 ***************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	57.76	1	296	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.3E-112	3	315	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
XGHIYKTLKC KEPTSAELLS YMQIFYKICP YFKFGYMSAN AVIVEALNDK DRVHIIDFQI 60 ALGTQWVPVI QAFAARQGGS PHVRITGVDD PVSEFARGQG LQMVGQRLSK LAETYQVPFE 120 FHALPVYASD VHADMLDIRP GEALAVNFHL VLHHIPDESV STNNHRDRLI RMVKGFAPSV 180 VTLVEQEANT NTARFFPRFM ETLSYYTAMF ESLDLTLPRE SKERVSVEQH CLARDIVNII 240 ACEGAERVER HELFGKWRSR LTMAGFKSHA LSSRVNATIK VALEFYNQNY RVVEKDDVLY 300 LGWLGRDLYV FSAWK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-51	15	314	92	378	Protein SCARECROW
5b3h_A	2e-51	15	314	91	377	Protein SCARECROW
5b3h_D	2e-51	15	314	91	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269\|PubMed:10817761}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020234361.1	1e-167	scarecrow-like transcription factor PAT1
Refseq	XP_029130396.1	1e-167	scarecrow-like transcription factor PAT1
Swissprot	Q9LDL7	1e-154	PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBL	A0A0B4U8K1	0.0	A0A0B4U8K1_PINRA; SCL10
STRING	Solyc07g047950.1.1	1e-165	(Solanum lycopersicum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48150.2	1e-156	GRAS family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Heyman J, et al. The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence. Nat Plants, 2016. 2(11): p. 16165 [PMID:27797356]