PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta008026

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

HD-ZIP

Protein Properties

Length: 317aa MW: 35602.4 Da PI: 7.6154

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-52171	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.6	4.3e-18	170	224	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F ++++++ +++ LAk+l+L+ rqV vWFqNrRa+ k Pta008026 170 RKKLRLSKEQSALLEESFLEHSTLNPKQKNALAKELNLQPRQVEVWFQNRRARTK 224 778899***********************************************98 PP
2	HD-ZIP_I/II	125.4	2.5e-40	170	260	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq++lLEesF e+++L+p++K++la+eL+lqprqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk Pta008026 170 RKKLRLSKEQSALLEESFLEHSTLNPKQKNALAKELNLQPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTEENRRLQKELQELR-ALK 260 69*************************************************************************************9.555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.957	166	226	IPR001356	Homeobox domain
SMART	SM00389	2.3E-16	168	230	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.49E-18	169	234	IPR009057	Homeodomain-like
CDD	cd00086	1.05E-15	170	227	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.6E-17	170	224	IPR009057	Homeodomain-like
Pfam	PF00046	2.1E-15	170	224	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	201	224	IPR017970	Homeobox, conserved site
Pfam	PF02183	1.4E-11	226	260	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	2.8E-21	226	269	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MEEAKNKQRG LERLKTLASD DMTGLALGVG LSMAMPEIAR HGDDQKSAPL QLEPLTFRPI 60 ATAARAETAP APSAPFLWFM SKNCREEVTV AESNVSGIVR GGGIDMNRVP ATNESEYSSV 120 FQADALRTID TGSVVVKRER ERTFELEAER DRTCDVSSRT SDEEEIGSTR KKLRLSKEQS 180 ALLEESFLEH STLNPKQKNA LAKELNLQPR QVEVWFQNRR ARTKLKQTEV DCEVLKRCCE 240 NLTEENRRLQ KELQELRALK AVPPQCVIGQ DNYYMPLPAT TLTMCPSCER VATMENSRNL 300 SFSKSRISQF AQKSAAC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	168	174	TRKKLRL
2	218	226	RRARTKLKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.16362	0.0	root\| shoot

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024388907.1	6e-96	homeobox-leucine zipper protein HAT4-like
TrEMBL	A9NX56	0.0	A9NX56_PICSI; Uncharacterized protein
STRING	PP1S31_269V6.1	2e-95	(Physcomitrella patens)