PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta007624
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family GRAS
Protein Properties Length: 342aa    MW: 38831.2 Da    PI: 6.5109
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-66682PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS426.52.2e-130334232374
       GRAS  32 spdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqa 131
                + +gdp++Rlaay++e+L arl+ s+ ++yk+l+++e +   sse l+++++++ev+P++kf++++aN aI ea++ ++rvHiiDf+i qG QW++L+qa
  Pta007624   3 NIYGDPLHRLAAYMVEGLVARLHFSGGHIYKTLKCKEPT---SSELLSYMHILYEVCPYFKFGYVAANGAIAEAFKDKDRVHIIDFQIAQGSQWVTLIQA 99 
                6789**********************************9...9********************************************************* PP

       GRAS 132 LasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLk 229
                +a+R++g+p++RiTgv++p+s+  + + l+ +gerL+k+Ae+ +vpfef+ l +   +d++ e+L+++pgEalaVn+ lqlh+++desv+++++rd++L+
  Pta007624 100 FAARQGGSPHVRITGVDDPQSEyaRGQGLNLVGERLSKLAESYQVPFEFHGL-SVFGSDVHAEMLEIRPGEALAVNFPLQLHHMPDESVNTSNHRDRLLR 198
                ********************99999**************************5.8899******************************************* PP

       GRAS 230 lvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpl 329
                +vk+ sP+vv++veqea++n+++F+ rf+e+l+yy+a+f+sl+++lpr+s+er++vE+++l+r+ivnv+aceg+er+erhe ++kWr+rl++aGFk++pl
  Pta007624 199 MVKNFSPNVVTLVEQEANTNTAPFFPRFMETLSYYTAMFESLDVTLPRDSKERVSVEQHCLARDIVNVIACEGDERVERHELFGKWRSRLTMAGFKSYPL 298
                **************************************************************************************************** PP

       GRAS 330 sekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                s ++++++k +l+ ++++ yr+ e++++l+lgW dr L+++SaW+
  Pta007624 299 SAHVNSTIKVVLNSYNEN-YRLIEKDEALYLGWLDRDLIVASAWK 342
                ****************55.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.6571323IPR005202Transcription factor GRAS
PfamPF035147.5E-1283342IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
VVNIYGDPLH RLAAYMVEGL VARLHFSGGH IYKTLKCKEP TSSELLSYMH ILYEVCPYFK  60
FGYVAANGAI AEAFKDKDRV HIIDFQIAQG SQWVTLIQAF AARQGGSPHV RITGVDDPQS  120
EYARGQGLNL VGERLSKLAE SYQVPFEFHG LSVFGSDVHA EMLEIRPGEA LAVNFPLQLH  180
HMPDESVNTS NHRDRLLRMV KNFSPNVVTL VEQEANTNTA PFFPRFMETL SYYTAMFESL  240
DVTLPRDSKE RVSVEQHCLA RDIVNVIACE GDERVERHEL FGKWRSRLTM AGFKSYPLSA  300
HVNSTIKVVL NSYNENYRLI EKDEALYLGW LDRDLIVASA WK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-62634237375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.198110.0root| shoot
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020234361.10.0scarecrow-like transcription factor PAT1
RefseqXP_029130396.10.0scarecrow-like transcription factor PAT1
SwissprotQ9LDL71e-179PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A0B4U8K10.0A0A0B4U8K1_PINRA; SCL10
STRINGEOX934420.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]