PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta007394

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

C2H2

Protein Properties

Length: 359aa MW: 39798.7 Da PI: 6.1578

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-24781	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13	0.00031	162	184	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Pta007394 162 FSCNYCQRKFYSSQALGGHQNAH 184 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.94E-6	159	189	No hit	No description
PROSITE profile	PS50157	11.427	162	189	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	164	184	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MMNIMKNCSI DLEGSESYFS EESVISQQLS ASNVSAGLES SLFSQQQHQP HYMFQVQENA 60 PKSGEKSSTE DFKLEETSEV SLNLTIGYDD EGGGTVREGK DLQTSNFIDY FGQSNHTEEA 120 ENEHDASVDT KGPLESSNEV GHPTTYPESS SLSAQGSEPR VFSCNYCQRK FYSSQALGGH 180 QNAHKRERTL AKRGQRIGAF QHRYISMASL PLHGSTESAT GQMNRSLGIK AHSLIHKPPY 240 AEPSLPLSHH GWSRPPIEQH PAVGKYVMED MGSSRMIVGN RGGVARFENN NFGAGRILGA 300 NPFLHEEPAS FCWPGSFRRM QQQSQEGGSY HTQNHETSSN AFYLKPQDDI SKLDLSLRL

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MMNIMKNCSI DLEGSESYFS EESVISQQLS ASNVSAGLES SLFSQQQHQP HYMFQVQENA  60
PKSGEKSSTE DFKLEETSEV SLNLTIGYDD EGGGTVREGK DLQTSNFIDY FGQSNHTEEA  120
ENEHDASVDT KGPLESSNEV GHPTTYPESS SLSAQGSEPR VFSCNYCQRK FYSSQALGGH  180
QNAHKRERTL AKRGQRIGAF QHRYISMASL PLHGSTESAT GQMNRSLGIK AHSLIHKPPY  240
AEPSLPLSHH GWSRPPIEQH PAVGKYVMED MGSSRMIVGN RGGVARFENN NFGAGRILGA  300
NPFLHEEPAS FCWPGSFRRM QQQSQEGGSY HTQNHETSSN AFYLKPQDDI SKLDLSLRL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.13260	0.0	root\| shoot\| xylem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010245557.1	3e-47	PREDICTED: zinc finger protein 3-like
TrEMBL	B8LP97	0.0	B8LP97_PICSI; Uncharacterized protein
STRING	XP_010245557.1	1e-46	(Nelumbo nucifera)