PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pta007225 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 375aa MW: 42223.6 Da PI: 4.5506 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 26 | 2.3e-08 | 4 | 50 | 14 | 55 |
AP2 14 rWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 r++A+++d ++n+ k+ ++++lg ++ +e Aa ++ a++k++g Pta007225 4 RYEAHLWDkNCWNQgqnKKgRQVYLGAYDDEEAAAHTYDLAALKYWG 50 799*****999955577557*************************98 PP | |||||||
2 | AP2 | 52.1 | 1.6e-16 | 93 | 144 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + +k+ +lg+f t eeAa+a++ a+ +++g Pta007225 93 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTFSTQEEAARAYDMAAIEYRG 144 89****99**********988422...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 14.394 | 1 | 58 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.70E-12 | 4 | 58 | No hit | No description |
SMART | SM00380 | 4.1E-10 | 4 | 64 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.5E-4 | 4 | 50 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.27E-10 | 5 | 60 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.3E-10 | 14 | 59 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.58E-26 | 93 | 154 | No hit | No description |
SuperFamily | SSF54171 | 3.86E-18 | 93 | 154 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.3E-12 | 93 | 144 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.1E-19 | 94 | 153 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.6E-28 | 94 | 158 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.953 | 94 | 152 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 375 aa Download sequence Send to blast |
MDWRYEAHLW DKNCWNQGQN KKGRQVYLGA YDDEEAAAHT YDLAALKYWG TETILNFPLN 60 TYAKELEEMQ SVSKEEYLAS LRRRSSGFSR GVSKYRGVAR HHHNGRWEAR IGRVLGNKYL 120 YLGTFSTQEE AARAYDMAAI EYRGLNAVTN FDLSRYMSRL RPAKDIINSD GDDVVVSNGD 180 DSGSSLLVPA GVPIETSNNT DDDNMSSLLL LQQPPQLSWT PPQLEEKESS SAAPEDPTDD 240 LDHLFSQSSK FKEIMEIRSS GHGHGHKVPG VELEDLHNVE TANFAEDLEM FFSNSSNMLG 300 SDAELSLNVD SPGSAMNNNM FCQPDHLHLQ MPFDMHDLCS GEFLDLDHHG QQPELEYPLI 360 DPISSFPNFA VRTCS |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017245606.1 | 1e-104 | PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A0D2Q6I2 | 7e-99 | A0A0D2Q6I2_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8JJ90 | 7e-99 | A0A1U8JJ90_GOSHI; AP2-like ethylene-responsive transcription factor At1g16060 isoform X2 | ||||
TrEMBL | A0A1U8JPW6 | 5e-99 | A0A1U8JPW6_GOSHI; AP2-like ethylene-responsive transcription factor At1g16060 isoform X1 | ||||
STRING | Gorai.009G008800.1 | 1e-99 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G54320.3 | 1e-75 | AP2 family protein |