PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta006968
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family GeBP
Protein Properties Length: 400aa    MW: 46113.8 Da    PI: 7.9387
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-2392PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57329.71.8e-0977168597
     DUF573   5 rlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk....aksgkepsfskehdqkifelskkiWg 97 
                + ws eDei+l   ++      g   + ++ afye +k+ ++++ s+ q+ eK++r++ +f   +++    + +++ ++ +++h+   +++ k+iWg
  Pta006968  77 KKWSIEDEISLANVILASS-A-G--GQINMRAFYERAKETLQSE-SRGQVYEKMKRMRSRFWAIESQlrdsKITEELFRYRSPHEAGLYKVWKQIWG 168
                56********999888763.3.3..3579*************98.789*************99888866544466677899***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045047.1E-1377168IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MKKTRDGLRP KQSRERLETK LPASKKKKNS RKTGPSGNKS QIDIEELLAQ TYPKEPSVLG  60
DATHRSNGVE LAKDTPKKWS IEDEISLANV ILASSAGGQI NMRAFYERAK ETLQSESRGQ  120
VYEKMKRMRS RFWAIESQLR DSKITEELFR YRSPHEAGLY KVWKQIWGRH ERKNEAAQDI  180
EMEQNRELRS RSHARQPHKG RHESRTEAAY INGELRSPSH PLQRQNGEVN DYPPEEEEEH  240
QQAEEEDNDG ETADKTPPRV ACNHDEEFNL IQTEIRALLS KVKNNVQAML DDTEAKMEGL  300
IDSLFKRAVV AAQVQFLGSD IGIGSCLCSN LSRRMKELET VRSVREFPGL NEAEAKVLQQ  360
KWRKHQIEEL KTFSGRLELL QEECKLCIKD LETTNDKYNS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110KKTRDGLRPK
2125130KRMRSR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.131700.0embryo| root| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5A8570.0D5A857_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.11e-09DNA-binding storekeeper protein-related transcriptional regulator