PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta006815
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family bZIP
Protein Properties Length: 421aa    MW: 45646.9 Da    PI: 9.1447
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-50111PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_150.54.5e-16210266460
                XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 
                +krerr+ +NRe+ArrsR+RK+a +  Le  v++L  eN++L ++  e+++++ +  
  Pta006815 210 VKRERRMLSNRESARRSRRRKQAHLTDLEIQVAQLRVENSSLFNRFTEINQKYNEAS 266
                79*****************************************99999999987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.6E-16204271IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.887209264IPR004827Basic-leucine zipper domain
PfamPF001701.3E-13210263IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1706.6E-11211263No hitNo description
SuperFamilySSF579591.45E-11211262No hitNo description
PROSITE patternPS000360214229IPR004827Basic-leucine zipper domain
PfamPF124988.1E-15278397IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
LHGCNYRRRR RSPVVSGRMS RSASEWAFQK FLSFDGSKIP SEDGEGEQKP LGVKDPLLHG  60
HMDNVPAALS PLFAEVKDEV LLPTDPRDYE AFLKRRLNLA CAAVAFTRVT GISSPGPGPS  120
TVDANQSQNT LGSERAASLV SQSSATDARA IYVGAASSTA SGPIGIPALP PQPKSGNTQV  180
RTTSGSSREQ SDDDDQEVGP SEQSMDPSHV KRERRMLSNR ESARRSRRRK QAHLTDLEIQ  240
VAQLRVENSS LFNRFTEINQ KYNEASVDNR VLKSDVEALR AKVKMAESMV PKAVAAATAG  300
FPPQNSSQVQ SAVGLRYRTG IFDSPATNVL QGEDGLYMNI AQSTGTGGSS LTCAISDMNQ  360
QNKELQIQHT GSKMGRTPSM QRVASLEHLQ KRIRGGMTCG SMPWGGAWDV DGSQVIEHSE  420
H
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1223230RRSRRRKQ
2225230SRRRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.106391e-105needle| root| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LQ620.0B8LQ62_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.11e-43bZIP family protein