PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta006680
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family MYB
Protein Properties Length: 449aa    MW: 50896.7 Da    PI: 9.2915
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S31823504PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-173176147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ede+l ++v+q+G+ +W++Ia+++  gR++k+c++rw++ 
        Pta006680 31 RGHWRPAEDEKLRELVEQYGPQNWNSIAEKLH-GRSGKSCRLRWFNQ 76
                     899*****************************.***********996 PP
2Myb_DNA-binding58.91.1e-1883126146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++T+eE+e+l+ a++++G++ W+ Iar ++ gRt++ +k++w+ 
        Pta006680  83 RRPFTEEEEERLLAAHRLHGNK-WAMIARLFP-GRTDNAVKNHWHV 126
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.5822677IPR017930Myb domain
SuperFamilySSF466891.42E-2930124IPR009057Homeodomain-like
SMARTSM007171.2E-143079IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-273284IPR009057Homeodomain-like
PfamPF139216.2E-173494No hitNo description
CDDcd001679.93E-143475No hitNo description
PROSITE profilePS5129427.06178132IPR017930Myb domain
SMARTSM007179.2E-1682130IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2185131IPR009057Homeodomain-like
CDDcd001671.82E-785125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MTEPVVLHEE IKTDRLSDAK DESSQAKMCP RGHWRPAEDE KLRELVEQYG PQNWNSIAEK  60
LHGRSGKSCR LRWFNQLDPR INRRPFTEEE EERLLAAHRL HGNKWAMIAR LFPGRTDNAV  120
KNHWHVIMAR KFRERSRIYG KRRSSCSHLM RKARPHSAHA AEHIEENSLS TFIDMYYRGC  180
HEDVGISSSS ILGRRPRKLP HDSTLENISS QIHGNGLILN PSGRSQGLEV VNPQGRSLSA  240
EGEAYKNRIL DSLCDIGMNN HVQSRKNFQD FFFQQSMRPA PSKVSSATSW LPILSGSTLS  300
KPPDLAQGEF RPDNFLAQSQ QVESMGXLKI PPFHNFTASS FRHRTTDEHN PSAAVAEAKE  360
AQLISPELVK RNTTTSYSPA YNLQLSINPQ SSPSTTQKEV NLVQQNKSYN ARDRNPYNIV  420
ESQVADHPIT DPDQGKETGF IDFLGVGVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-31311317107B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.85450.0xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ27IN90.0Q27IN9_PINTA; R2R3-MYB transcription factor MYB3
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.14e-57myb domain protein 105