PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta006656

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

G2-like

Protein Properties

Length: 453aa MW: 50722.7 Da PI: 6.6538

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-51740	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.9	5.6e-34	65	119	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLHerFv+av+qLGG++kAtPk++l++m+vkgLtl+h+kSHLQkYRl Pta006656 65 KPRLKWTPELHERFVDAVTQLGGPDKATPKSVLRVMGVKGLTLYHLKSHLQKYRL 119 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.345	62	122	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.7E-33	63	120	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.06E-16	64	120	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.0E-24	65	120	IPR006447	Myb domain, plants
Pfam	PF00249	2.2E-9	67	118	IPR001005	SANT/Myb domain
Pfam	PF14379	1.8E-23	161	207	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence Send to blast
XSDLGLRNIA FMLPRMHQID FSNHGLAMGL HRGQLPLSQR DHQRGLSAGT IVQNELGVVV 60 STDPKPRLKW TPELHERFVD AVTQLGGPDK ATPKSVLRVM GVKGLTLYHL KSHLQKYRLG 120 KQTCKESNSD TNKDGVSSDC GKDPNIKGRD SNIRTNQKEG MHITEALNAQ VEVQKRLHEQ 180 LEVQRCLQLR IEAQGKYINA ILEKAQQALI YQTSTPARLG AESAELVEMV SNVATDCNET 240 ASFSRSSASS SLMDMPTQDE VQYDRDRSRA FFCDNDSSIW HNEVSVHNKS LQEPGFNDSN 300 GCLYKTDSEH ELPQTREFNV CSVTNSMWDS NSHNRLLAGD SMKLIESGQN QHPQNENSLP 360 IMDETTMEPT VERTASRISL PEERLPMLVQ PPNAHFLHAC LGGHEQGLFK NYDPCPPSLL 420 VKRRKVVEGL DLNMRGDQGA TPQLDLNTYG WGR

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence Send to blast

XSDLGLRNIA FMLPRMHQID FSNHGLAMGL HRGQLPLSQR DHQRGLSAGT IVQNELGVVV  60
STDPKPRLKW TPELHERFVD AVTQLGGPDK ATPKSVLRVM GVKGLTLYHL KSHLQKYRLG  120
KQTCKESNSD TNKDGVSSDC GKDPNIKGRD SNIRTNQKEG MHITEALNAQ VEVQKRLHEQ  180
LEVQRCLQLR IEAQGKYINA ILEKAQQALI YQTSTPARLG AESAELVEMV SNVATDCNET  240
ASFSRSSASS SLMDMPTQDE VQYDRDRSRA FFCDNDSSIW HNEVSVHNKS LQEPGFNDSN  300
GCLYKTDSEH ELPQTREFNV CSVTNSMWDS NSHNRLLAGD SMKLIESGQN QHPQNENSLP  360
IMDETTMEPT VERTASRISL PEERLPMLVQ PPNAHFLHAC LGGHEQGLFK NYDPCPPSLL  420
VKRRKVVEGL DLNMRGDQGA TPQLDLNTYG WGR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	3e-21	65	121	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-21	65	121	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-21	65	121	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-21	65	121	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.19042	0.0	root

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q94A57	5e-65	PHL2_ARATH; Protein PHR1-LIKE 2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	2e-67	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]